xfygogo
/
dune-spack
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Unique package with one variant per module

This commit is contained in:
Gauthier Folzan 2020-05-10 21:21:48 +02:00
parent 93193cd33d
commit 99615d3cdd
27 changed files with 307 additions and 1903 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

31
packages/dune-alugrid/AddQuadMathFlags.cmake.patch
View File

@ -1,31 +0,0 @@
--- a/cmake/modules/AddQuadMathFlags.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/AddQuadMathFlags.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,28 @@
+# Defines the functions to use QuadMath
+#
+# .. cmake_function:: add_dune_quadmath_flags
+#
+# .. cmake_param:: targets
+# :positional:
+# :single:
+# :required:
+#
+# A list of targets to use QuadMath with.
+#
+
+
+function(add_dune_quadmath_flags _targets)
+ if(QUADMATH_FOUND)
+ foreach(_target ${_targets})
+ target_link_libraries(${_target} "quadmath")
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-DENABLE_QUADMATH=1 -D_GLIBCXX_USE_FLOAT128=1 ")
+ if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-fext-numeric-literals ")
+ endif()
+ endforeach(_target ${_targets})
+ endif(QUADMATH_FOUND)
+endfunction(add_dune_quadmath_flags)

62
packages/dune-alugrid/FindQuadMath.cmake.patch
View File

@ -1,62 +0,0 @@
--- a/cmake/modules/FindQuadMath.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/FindQuadMath.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,59 @@
+# .. cmake_module::
+#
+# Find the GCC Quad-Precision library
+#
+# Sets the following variables:
+#
+# :code:`QUADMATH_FOUND`
+# True if the Quad-Precision library was found.
+#
+#
+
+
+# search for the header quadmath.h
+include(CheckIncludeFile)
+check_include_file(quadmath.h QUADMATH_HEADER)
+
+include(CheckCSourceCompiles)
+include(CMakePushCheckState)
+
+cmake_push_check_state() # Save variables
+set(CMAKE_REQUIRED_LIBRARIES quadmath)
+check_c_source_compiles("
+#include <quadmath.h>
+
+int main ()
+{
+ __float128 r = 1.0q;
+ r = strtoflt128(\"1.2345678\", NULL);
+ return 0;
+}" QUADMATH_COMPILES)
+cmake_pop_check_state()
+
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args(
+ "QuadMath"
+ DEFAULT_MSG
+ QUADMATH_HEADER
+ QUADMATH_COMPILES
+)
+
+# text for feature summary
+set_package_properties("QuadMath" PROPERTIES
+ DESCRIPTION "GCC Quad-Precision library")
+
+# set HAVE_QUADMATH for config.h
+set(HAVE_QUADMATH ${QUADMATH_FOUND})
+
+# -fext-numeric-literals is a GCC extension not available in other compilers like clang
+if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set(_QUADMATH_EXT_NUMERIC_LITERALS "-fext-numeric-literals")
+endif()
+
+# register all QuadMath related flags
+if(HAVE_QUADMATH)
+ dune_register_package_flags(COMPILE_DEFINITIONS "ENABLE_QUADMATH=1" "_GLIBCXX_USE_FLOAT128=1"
+ COMPILE_OPTIONS ${_QUADMATH_EXT_NUMERIC_LITERALS}
+ LIBRARIES "quadmath")
+endif()

120
packages/dune-alugrid/package.py
View File

@ -1,120 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-alugrid
#
# You can edit this file again by typing:
#
# spack edit dune-alugrid
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DuneAlugrid(CMakePackage):
"""ALUGrid is an adaptive, loadbalancing, unstructured implementation of the DUNE grid interface supporting either simplices or cubes."""
homepage = "https://www.dune-project.org"
url = "https://github.com/dune-mirrors/dune-alugrid/archive/v2.6.0.tar.gz"
version('2.6.0', sha256='25fa4a5127837a0def2f93ae7fda38c5098dd066536236533015755ad264a870')
version('2.4.0', sha256='fd0fab5b2c6e1e0c9f792947dad1f9c2e2d6b65242935474017e0c278bab3ae1')
#option
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Math Kernel library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('python', default=False, description='Build with Python and dune-python')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('zlib', default=True, description='Build zlib library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('corepy', default=False, description='Build with dune-corepy support')
variant('uggrid', default=False, description='Build with dune-uggrid support')
variant('ptscotch', default=True, description='Build with PT-Scotch support')
variant('metis', default=True, description='Build with METIS support')
variant('parmetis', default=True, description='Build with ParMETIS support')
variant('alberta', default=False, description='Build with Alberta support')
variant('psurface', default=False, description='Build with Psurface support')
variant('amiramesh', default=False, description='Build with AmiraMesh support')
variant('sionlib', default=False, description='Build with SIONlib support')
variant('zoltan', default=True, description='Build with Zoltan support')
variant('threads', default=True, description='Whether we are using pthreads')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('selector', default=True, description='Grid selector definition added to config.h')
variant('shared', default=True, description='Enables the build of shared libraries.')
#dependencies
depends_on('dune-common')
depends_on('dune-geometry')
depends_on('dune-grid')
depends_on('dune-corepy', when='+corepy')
depends_on('dune-python', when='+python')
depends_on('dune-uggrid', when='+uggrid')
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.0:')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('zlib', when='+zlib')
depends_on('scotch+mpi', when='+ptscotch')
depends_on('zoltan', when='+zoltan')
depends_on('metis', when='+metis')
depends_on('parmetis', when='+parmetis')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
depends_on('alberta', when='+alberta')
depends_on('psurface', when='+psurface')
depends_on('amiramesh', when='+amiramesh')
depends_on('sionlib', when='+sionlib')
patch('AddQuadMathFlags.cmake.patch', when='@2.6')
patch('FindQuadMath.cmake.patch', when='@2.6')
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
if 'python' in spec:
cmake_args.append('-DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE')
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args

106
packages/dune-common/package.py
View File

@ -1,106 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-common
#
# You can edit this file again by typing:
#
# spack edit dune-common
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DuneCommon(CMakePackage):
"""
dune-common provides basic infrastructure classes for all Dune
modules.
"""
homepage = "https://www.dune-project.org"
url = "https://www.dune-project.org/download/2.7.0/dune-common-2.7.0.tar.gz"
list_url = "https://www.dune-project.org/download/"
list_depth = 1
version('2.7.0', sha256='3c83c583a45325513113148cb94bd978e601907a6591c765f6253342e00f1890')
version('2.6.0', sha256='1c566abb509ffd29690055acb5a7a69e3eda3848c2171f7af75c1e8743663c05')
version('2.5.2', sha256='042fc7b9ae4b781e027a48048ea4067deb924ae172e56821f679bc8afe312159')
version('2.5.1', sha256='fa9b1e538236e761d4eec703343e1345e8da1b75b3d2adbdde5fc53012d05814')
version('2.5.0', sha256='3a6e20189926f0908316d43b2b130ae89e3662865926325a236c5465640a33c2')
version('2.4.2', sha256='93e973e1db81950c378cf3ebe6cffca32fb642c7bd5e40a8883ebdc8c6909536')
version('2.4.1', sha256='e4e9a4d6207484728a8582c5bca14c1479075b655d095790a037e6f0135762a8')
version('2.4.0', sha256='7c2865e467883adbfdf4b248b8dbf3cd171a47c7498164d2dbe700171fdb7b1f')
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Math Kernel library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
variant('python', default=True, description='Build with Python')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('selector', default=True, description='Grid selector definition added to config.h')
# FIXME: Add dependencies if required.
#option
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.0:', when='+python')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
def url_for_version(self, version):
url = "https://www.dune-project.org/download/{1}/dune-common-{1}.tar.gz"
return url.format(version.up_to(2), version)
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
if 'python' in spec:
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args

31
packages/dune-functions/AddQuadMathFlags.cmake.patch
View File

@ -1,31 +0,0 @@
--- a/cmake/modules/AddQuadMathFlags.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/AddQuadMathFlags.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,28 @@
+# Defines the functions to use QuadMath
+#
+# .. cmake_function:: add_dune_quadmath_flags
+#
+# .. cmake_param:: targets
+# :positional:
+# :single:
+# :required:
+#
+# A list of targets to use QuadMath with.
+#
+
+
+function(add_dune_quadmath_flags _targets)
+ if(QUADMATH_FOUND)
+ foreach(_target ${_targets})
+ target_link_libraries(${_target} "quadmath")
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-DENABLE_QUADMATH=1 -D_GLIBCXX_USE_FLOAT128=1 ")
+ if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-fext-numeric-literals ")
+ endif()
+ endforeach(_target ${_targets})
+ endif(QUADMATH_FOUND)
+endfunction(add_dune_quadmath_flags)

62
packages/dune-functions/FindQuadMath.cmake.patch
View File

@ -1,62 +0,0 @@
--- a/cmake/modules/FindQuadMath.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/FindQuadMath.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,59 @@
+# .. cmake_module::
+#
+# Find the GCC Quad-Precision library
+#
+# Sets the following variables:
+#
+# :code:`QUADMATH_FOUND`
+# True if the Quad-Precision library was found.
+#
+#
+
+
+# search for the header quadmath.h
+include(CheckIncludeFile)
+check_include_file(quadmath.h QUADMATH_HEADER)
+
+include(CheckCSourceCompiles)
+include(CMakePushCheckState)
+
+cmake_push_check_state() # Save variables
+set(CMAKE_REQUIRED_LIBRARIES quadmath)
+check_c_source_compiles("
+#include <quadmath.h>
+
+int main ()
+{
+ __float128 r = 1.0q;
+ r = strtoflt128(\"1.2345678\", NULL);
+ return 0;
+}" QUADMATH_COMPILES)
+cmake_pop_check_state()
+
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args(
+ "QuadMath"
+ DEFAULT_MSG
+ QUADMATH_HEADER
+ QUADMATH_COMPILES
+)
+
+# text for feature summary
+set_package_properties("QuadMath" PROPERTIES
+ DESCRIPTION "GCC Quad-Precision library")
+
+# set HAVE_QUADMATH for config.h
+set(HAVE_QUADMATH ${QUADMATH_FOUND})
+
+# -fext-numeric-literals is a GCC extension not available in other compilers like clang
+if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set(_QUADMATH_EXT_NUMERIC_LITERALS "-fext-numeric-literals")
+endif()
+
+# register all QuadMath related flags
+if(HAVE_QUADMATH)
+ dune_register_package_flags(COMPILE_DEFINITIONS "ENABLE_QUADMATH=1" "_GLIBCXX_USE_FLOAT128=1"
+ COMPILE_OPTIONS ${_QUADMATH_EXT_NUMERIC_LITERALS}
+ LIBRARIES "quadmath")
+endif()

128
packages/dune-functions/package.py
View File

@ -1,128 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-functions
#
# You can edit this file again by typing:
#
# spack edit dune-functions
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DuneFunctions(CMakePackage):
"""Abstractions for functions and discrete function space bases"""
homepage = "https://www.dune-project.org"
url = "https://gitlab.dune-project.org/staging/dune-functions/-/archive/releases/2.7/dune-functions-releases-2.7.tar.gz"
list_url = 'https://gitlab.dune-project.org/staging/dune-functions/-/archive/releases/'
list_depth = 1
version('2.7', sha256='cd9b16748f285ded2c9a4378d5b2b320e81180c9da88ea647f5a712cba442f80')
version('2.6', sha256='3df99f6d741ceb0b0f2fbba05e5562f5c65b9e45385991801f68fa163a2474a1')
#option
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Math Kernel library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('uggrid', default=True, description='Build with dune-uggrid support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('metis', default=True, description='Build METIS library support')
variant('parmetis', default=True, description='Build ParMETIS library support')
variant('arpack', default=True, description='Build ARnoldi PACKage library support')
variant('suitesparse', default=True, description='Build SuiteSparse library support')
variant('superlu', default=True, description='Build Supernodal LU library support')
variant('alberta', default=False, description='Build with Alberta support')
variant('psurface', default=False, description='Build with Psurface support')
variant('amiramesh', default=False, description='Build with AmiraMesh support')
variant('selector', default=True, description='Grid selector definition added to config.h')
variant('oldcategory', default=True, description='Enable/Disable the backwards compatibility of the category enum/method in dune-istl solvers, preconditioner, etc.')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
variant('alugrid', default=False, description='Support of dune-alugrid module')
variant('fempy', default=False, description='Support of dune-fempy module')
variant('spgrid', default=False, description='Support of dune-spgrid module')
#dependencies
depends_on('dune-localfunctions')
depends_on('dune-grid+uggrid')
depends_on('dune-typetree')
depends_on('dune-istl')
depends_on('dune-common+python+shared')
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.8.2:')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
depends_on('metis', when='+metis')
depends_on('parmetis', when='+parmetis')
depends_on('arpack-ng', when='+arpack')
depends_on('suite-sparse', when='+suitesparse')
depends_on('superlu', when='+superlu')
depends_on('alberta', when='+alberta')
depends_on('psurface', when='+psurface')
depends_on('amiramesh', when='+amiramesh')
def url_for_version(self, version):
url = 'https://gitlab.dune-project.org/staging/dune-functions/-/archive/releases/{1}/dune-functions-releases-{1}.tar.gz'
return url.format(version.up_to(2), version)
patch('AddQuadMathFlags.cmake.patch')
patch('FindQuadMath.cmake.patch')
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DDUNE_ISTL_SUPPORT_OLD_CATEGORY=%s' % variant_bool('+oldcategory'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
if 'python' in spec:
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args

109
packages/dune-geometry/package.py
View File

@ -1,109 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-geometry
#
# You can edit this file again by typing:
#
# spack edit dune-geometry
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DuneGeometry(CMakePackage):
"""
dune-geometry includes everything related to the DUNE reference
elements. This includes the reference elements themselves, mappings
on the reference elements (geometries), and quadratures.
"""
homepage = "https://www.dune-project.org"
url = "https://www.dune-project.org/download/2.7.0/dune-geometry-2.7.0.tar.gz"
list_url = "https://www.dune-project.org/download/"
list_depth = 1
version('2.7.0', sha256='d996c73efa345338766c5e4774e3b06ec1ed27eb745916af35877bbf38dd2cb2')
version('2.6.0', sha256='7661155a0be3d001db43c6d99f1ee1a04101bc3e666dade82a40a6ed65578a42')
version('2.5.2', sha256='30e9e6c22206034e3e490d3b0bf841cd49e8ece0d3a2f6df453e8594f546ec0d')
version('2.5.1', sha256='f3782b27a4622bd7b7bc52fa7561d5bcf4f0dc39d6c161c082047c7b92140076')
version('2.5.0', sha256='0b8ea21c046b703dbb4dfb1481e5ea74c9ea7487930be66d7a3fd74c854fb08e')
version('2.4.2', sha256='4fe3d09b1dba6c36b73662af32088639eac5af33e01599469de2b71bd0a8c4e3')
version('2.4.1', sha256='a6b92785150d309760f95add38d8a12bfd906d994e298cd54e744f34064b4e0f')
version('2.4.0', sha256='f0f8acb95fd325b9b78f9d1e35d733830865378c4d5d5c34e3ecce687341fe86')
#option
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Threading Building Blocks library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('python', default=True, description='Build with Python')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('selector', default=True, description='Grid selector definition added to config.h')
#dependencies
depends_on('dune-common')
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.0:')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
def url_for_version(self, version):
url = "https://www.dune-project.org/download/{1}/dune-geometry-{1}.tar.gz"
return url.format(version.up_to(2), version)
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
if 'python' in spec:
cmake_args.append('-DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE')
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args

116
packages/dune-grid/package.py
View File

@ -1,116 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-grid
#
# You can edit this file again by typing:
#
# spack edit dune-grid
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DuneGrid(CMakePackage):
"""
dune-grid provides grid interface and some grid implementations
"""
homepage = "https://www.dune-project.org"
url = "https://www.dune-project.org/download/2.7.0/dune-grid-2.7.0.tar.gz"
list_url = "https://www.dune-project.org/download/"
list_depth = 1
version('2.7.0', sha256='fa88dd60619df51100327a9128c3f7242a3a13b7ddfbac43a04f7e85c1f8d29d')
version('2.6.0', sha256='a03145e8fd9b0d585f84ca8b62a65d6fc3e918fb571d48c1eb69f95499dee4ca')
version('2.5.2', sha256='5763e36a0623f37a2cec14d62631e56468e10c3b4ed68f7a36b9479b13fd87d5')
version('2.5.1', sha256='228f4bbeb8e810b02389f08307997b1f6290d49265e61281566e50afdadee511')
version('2.5.0', sha256='a5ce78e6cf59b2968fdf4a638e199bae5c935b43e428b2492d7adf34fb609027')
version('2.4.2', sha256='b3ab581b48f65da16200486ac56320ed0ea7811f88a5d00a131b23b3299e0c72')
version('2.4.1', sha256='eeb3858bef485faa2c2f570ebc303742fa0b8581725523ba85fd87c5306353d7')
version('2.4.0', sha256='e608bb47e7e9965b561c5eaceeb55cdc0a22adc5caf96c2eb67ee0cd1f8db9b4')
#option
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Math Kernel library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('python', default=True, description='Build with Python and dune-python')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('uggrid', default=False, description='Build with dune-uggrid support')
variant('metis', default=True, description='Build with METIS support')
variant('parmetis', default=True, description='Build with ParMETIS support')
variant('alberta', default=False, description='Build with Alberta support')
variant('psurface', default=False, description='Build with Psurface support')
variant('amiramesh', default=False, description='Build with AmiraMesh support')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('selector', default=True, description='Grid selector definition added to config.h')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
#dependencies
depends_on('dune-common')
depends_on('dune-geometry')
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.0:')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
depends_on('metis', when='+metis')
depends_on('parmetis', when='+parmetis')
depends_on('dune-uggrid', when='+uggrid')
depends_on('alberta', when='+alberta')
depends_on('psurface', when='+psurface')
depends_on('amiramesh', when='+amiramesh')
def url_for_version(self, version):
url = "https://www.dune-project.org/download/{1}/dune-grid-{1}.tar.gz"
return url.format(version.up_to(2), version)
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
if 'python' in spec:
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args

122
packages/dune-istl/package.py
View File

@ -1,122 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-istl
#
# You can edit this file again by typing:
#
# spack edit dune-istl
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DuneIstl(CMakePackage):
"""
dune-istl is the iterative solver template library which provides
generic sparse matrix/vector classes and a variety of solvers based
on these classes. A special feature is the use of templates to
exploit the recursive block structure of finite element matrices at
compile time. Available solvers include Krylov methods, (block-)
incomplete decompositions and aggregation-based algebraic multigrid.
"""
homepage = "https://www.dune-project.org"
url = "https://www.dune-project.org/download/2.7.0/dune-istl-2.7.0.tar.gz"
list_url = "https://www.dune-project.org/download/"
list_depth = 1
version('2.7.0', sha256='c98d218bdf79549bb2e96fc465e9f9a72f5d88b78090812a59dae85cfee3833e')
version('2.6.0', sha256='5ce06fc396624f654c3f34e333fd5900e992c4596b3230abe68617ed77f64f50')
version('2.5.2', sha256='9fe33fb60b9c9f98100bfc909eb4d56598bae4f036f01f00b4a9fd2498387178')
version('2.5.1', sha256='7e183b1361419620e3df7287d962bcbc1860fa8233588f5b25507ef7a20649dc')
version('2.5.0', sha256='f9af37af1e8186443df384f155d66d2f16e95a909f9574d2bcae85d6d14b95ab')
version('2.4.2', sha256='7e02eaa3d2d054f056709d1c9a91235b73bc0f96b47630f91c914d349093f572')
version('2.4.1', sha256='0ea512e538935812cd6f3a9504f3b06fadff5c15d9d1b0dc499a5a913ea02a4d')
version('2.4.0', sha256='205686b77f7e36d6bc0d2771b1514d98d221b608e5f4efdeeafb1a750e3ca2ba')
#option
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Threading Building Blocks library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('python', default=True, description='Build with Python')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('metis', default=True, description='Build METIS library support')
variant('parmetis', default=True, description='Build ParMETIS library support')
variant('suitesparse', default=True, description='Build SuiteSparse library support')
variant('superlu', default=True, description='Build Supernodal LU library support')
variant('arpack', default=True, description='Build ARnoldi PACKage library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('oldcategory', default=True, description='Enable/Disable the backwards compatibility of the category enum/method in dune-istl solvers, preconditioner, etc.')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('selector', default=True, description='Grid selector definition added to config.h')
#dependencies
depends_on('dune-common')
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.0:')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('metis', when='+metis')
depends_on('parmetis', when='+parmetis')
depends_on('suite-sparse', when='+suitesparse')
depends_on('superlu', when='+superlu')
depends_on('arpack-ng', when='+arpack')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
def url_for_version(self, version):
url = "https://www.dune-project.org/download/{1}/dune-istl-{1}.tar.gz"
return url.format(version.up_to(2), version)
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
cmake_args.append('-DDUNE_ISTL_SUPPORT_OLD_CATEGORY=%s' % variant_bool('+oldcategory'))
if 'python' in spec:
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args

31
packages/dune-localfunctions/AddQuadMathFlags.cmake.patch
View File

@ -1,31 +0,0 @@
--- a/cmake/modules/AddQuadMathFlags.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/AddQuadMathFlags.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,28 @@
+# Defines the functions to use QuadMath
+#
+# .. cmake_function:: add_dune_quadmath_flags
+#
+# .. cmake_param:: targets
+# :positional:
+# :single:
+# :required:
+#
+# A list of targets to use QuadMath with.
+#
+
+
+function(add_dune_quadmath_flags _targets)
+ if(QUADMATH_FOUND)
+ foreach(_target ${_targets})
+ target_link_libraries(${_target} "quadmath")
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-DENABLE_QUADMATH=1 -D_GLIBCXX_USE_FLOAT128=1 ")
+ if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-fext-numeric-literals ")
+ endif()
+ endforeach(_target ${_targets})
+ endif(QUADMATH_FOUND)
+endfunction(add_dune_quadmath_flags)

62
packages/dune-localfunctions/FindQuadMath.cmake.patch
View File

@ -1,62 +0,0 @@
--- a/cmake/modules/FindQuadMath.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/FindQuadMath.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,59 @@
+# .. cmake_module::
+#
+# Find the GCC Quad-Precision library
+#
+# Sets the following variables:
+#
+# :code:`QUADMATH_FOUND`
+# True if the Quad-Precision library was found.
+#
+#
+
+
+# search for the header quadmath.h
+include(CheckIncludeFile)
+check_include_file(quadmath.h QUADMATH_HEADER)
+
+include(CheckCSourceCompiles)
+include(CMakePushCheckState)
+
+cmake_push_check_state() # Save variables
+set(CMAKE_REQUIRED_LIBRARIES quadmath)
+check_c_source_compiles("
+#include <quadmath.h>
+
+int main ()
+{
+ __float128 r = 1.0q;
+ r = strtoflt128(\"1.2345678\", NULL);
+ return 0;
+}" QUADMATH_COMPILES)
+cmake_pop_check_state()
+
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args(
+ "QuadMath"
+ DEFAULT_MSG
+ QUADMATH_HEADER
+ QUADMATH_COMPILES
+)
+
+# text for feature summary
+set_package_properties("QuadMath" PROPERTIES
+ DESCRIPTION "GCC Quad-Precision library")
+
+# set HAVE_QUADMATH for config.h
+set(HAVE_QUADMATH ${QUADMATH_FOUND})
+
+# -fext-numeric-literals is a GCC extension not available in other compilers like clang
+if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set(_QUADMATH_EXT_NUMERIC_LITERALS "-fext-numeric-literals")
+endif()
+
+# register all QuadMath related flags
+if(HAVE_QUADMATH)
+ dune_register_package_flags(COMPILE_DEFINITIONS "ENABLE_QUADMATH=1" "_GLIBCXX_USE_FLOAT128=1"
+ COMPILE_OPTIONS ${_QUADMATH_EXT_NUMERIC_LITERALS}
+ LIBRARIES "quadmath")
+endif()

114
packages/dune-localfunctions/package.py
View File

@ -1,114 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-localfunctions
#
# You can edit this file again by typing:
#
# spack edit dune-localfunctions
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DuneLocalfunctions(CMakePackage):
"""
dune-localfunctions provides interface and implementation for shape
functions defined on the DUNE reference elements. In addition to the
shape function, interpolation operators and special keys are
provided which can be used to assemble global function spaces on
finite-element grids.
"""
homepage = "https://www.dune-project.org"
url = "https://www.dune-project.org/download/2.7.0/dune-localfunctions-2.7.0.tar.gz"
list_url = "https://www.dune-project.org/download/"
list_depth = 1
version('2.7.0', sha256='0dbb8e559cc9ca3a506116fc49648c990a40e3162cf4659289f1d96d602a30fa')
version('2.6.0', sha256='14664b007fbc5e3592740075d2aeca6890e6e185f9924da044fe726ea3fc86a5')
version('2.5.2', sha256='7253fb9186f73bf58d49ecaee22cccd4ad197eff09b07955568307f0cc946958')
version('2.5.1', sha256='4308d45132f463ca6c37cf59f0ef52b30b13dc01afba782c467e7ed6511dd0c0')
version('2.5.0', sha256='d92e05fbfcb10750aba0597eca1c43c3842a657bb53ab7f25c33c1e24cc654ea')
version('2.4.2', sha256='652dea9a47934be62f8c3777a7fda5c1e2d2b2fead5777d180f467acf8472a31')
version('2.4.1', sha256='569cd4839564f4d419e52a51873c3e2b153f9656d77a37e0b5fb22f15423399f')
version('2.4.0', sha256='5edb297ac26901232dd0cb2899a56d562192abe1cc6ac79efec57818359112e3')
#option
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Threading Building Blocks library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
variant('python', default=True, description='Build with Python')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('selector', default=True, description='Grid selector definition added to config.h')
#dependencies
depends_on('dune-common')
depends_on('dune-geometry')
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.0:')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
patch('AddQuadMathFlags.cmake.patch', when='@2.6')
patch('FindQuadMath.cmake.patch', when='@2.6')
def url_for_version(self, version):
url = "https://www.dune-project.org/download/{1}/dune-localfunctions-{1}.tar.gz"
return url.format(version.up_to(2), version)
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
if 'python' in spec:
cmake_args.append('-DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE')
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args

31
packages/dune-newmodule/AddQuadMathFlags.cmake.patch
View File

@ -1,31 +0,0 @@
--- a/cmake/modules/AddQuadMathFlags.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/AddQuadMathFlags.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,28 @@
+# Defines the functions to use QuadMath
+#
+# .. cmake_function:: add_dune_quadmath_flags
+#
+# .. cmake_param:: targets
+# :positional:
+# :single:
+# :required:
+#
+# A list of targets to use QuadMath with.
+#
+
+
+function(add_dune_quadmath_flags _targets)
+ if(QUADMATH_FOUND)
+ foreach(_target ${_targets})
+ target_link_libraries(${_target} "quadmath")
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-DENABLE_QUADMATH=1 -D_GLIBCXX_USE_FLOAT128=1 ")
+ if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-fext-numeric-literals ")
+ endif()
+ endforeach(_target ${_targets})
+ endif(QUADMATH_FOUND)
+endfunction(add_dune_quadmath_flags)

62
packages/dune-newmodule/FindQuadMath.cmake.patch
View File

@ -1,62 +0,0 @@
--- a/cmake/modules/FindQuadMath.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/FindQuadMath.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,59 @@
+# .. cmake_module::
+#
+# Find the GCC Quad-Precision library
+#
+# Sets the following variables:
+#
+# :code:`QUADMATH_FOUND`
+# True if the Quad-Precision library was found.
+#
+#
+
+
+# search for the header quadmath.h
+include(CheckIncludeFile)
+check_include_file(quadmath.h QUADMATH_HEADER)
+
+include(CheckCSourceCompiles)
+include(CMakePushCheckState)
+
+cmake_push_check_state() # Save variables
+set(CMAKE_REQUIRED_LIBRARIES quadmath)
+check_c_source_compiles("
+#include <quadmath.h>
+
+int main ()
+{
+ __float128 r = 1.0q;
+ r = strtoflt128(\"1.2345678\", NULL);
+ return 0;
+}" QUADMATH_COMPILES)
+cmake_pop_check_state()
+
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args(
+ "QuadMath"
+ DEFAULT_MSG
+ QUADMATH_HEADER
+ QUADMATH_COMPILES
+)
+
+# text for feature summary
+set_package_properties("QuadMath" PROPERTIES
+ DESCRIPTION "GCC Quad-Precision library")
+
+# set HAVE_QUADMATH for config.h
+set(HAVE_QUADMATH ${QUADMATH_FOUND})
+
+# -fext-numeric-literals is a GCC extension not available in other compilers like clang
+if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set(_QUADMATH_EXT_NUMERIC_LITERALS "-fext-numeric-literals")
+endif()
+
+# register all QuadMath related flags
+if(HAVE_QUADMATH)
+ dune_register_package_flags(COMPILE_DEFINITIONS "ENABLE_QUADMATH=1" "_GLIBCXX_USE_FLOAT128=1"
+ COMPILE_OPTIONS ${_QUADMATH_EXT_NUMERIC_LITERALS}
+ LIBRARIES "quadmath")
+endif()

59
packages/dune-newmodule/package.py
View File

@ -1,7 +1,5 @@
from spack import * from spack import *
class DuneNewmodule(CMakePackage): class DuneNewmodule(CMakePackage):
"""Abstractions for functions and discrete function space bases""" """Abstractions for functions and discrete function space bases"""
@ -15,64 +13,9 @@ class DuneNewmodule(CMakePackage):
#option #option
variant('geometry', default=True, description='Build with dune-geometry support')
variant('grid', default=True, description='Build with dune-grid support')
variant('istl', default=True, description='Build with dune-istl support')
variant('localfunctions', default=True, description='Build with dune-localfunctions support')
variant('uggrid', default=True, description='Build with dune-uggrid support')
variant('functions', default=True, description='Build with dune-functions support')
variant('python', default=True, description='Build with dune-python support')
variant('typetree', default=True, description='Build with dune-typetree support')
variant('alugrid', default=False, description='Build with dune-alugrid support')
variant('selector', default=True, description='Grid selector definition added to config.h')
variant('oldcategory', default=True, description='Enable/Disable the backwards compatibility of the category enum/method in dune-istl solvers, preconditioner, etc.')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('selector', default=True, description='Grid selector definition added to config.h')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
#dependencies #dependencies
depends_on('dune-common',type=('build', 'link', 'run')) depends_on('dune',type=('build', 'link', 'run'))
depends_on('dune-alugrid', when='+alugrid')
depends_on('dune-functions', when='+functions')
depends_on('dune-geometry', when='+geometry')
depends_on('dune-istl', when='+istl')
depends_on('dune-localfunctions', when='+localfunctions')
depends_on('dune-python', when='+python')
depends_on('dune-typetree', when='+typetree')
depends_on('dune-grid+uggrid', when='+grid')
depends_on('dune-uggrid', when='+uggrid')
depends_on('cmake@3.1:', type='build') depends_on('cmake@3.1:', type='build')
patch('AddQuadMathFlags.cmake.patch')
patch('FindQuadMath.cmake.patch')
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DDUNE_ISTL_SUPPORT_OLD_CATEGORY=%s' % variant_bool('+oldcategory'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
if 'python' in spec:
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args

31
packages/dune-python/AddQuadMathFlags.cmake.patch
View File

@ -1,31 +0,0 @@
--- a/cmake/modules/AddQuadMathFlags.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/AddQuadMathFlags.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,28 @@
+# Defines the functions to use QuadMath
+#
+# .. cmake_function:: add_dune_quadmath_flags
+#
+# .. cmake_param:: targets
+# :positional:
+# :single:
+# :required:
+#
+# A list of targets to use QuadMath with.
+#
+
+
+function(add_dune_quadmath_flags _targets)
+ if(QUADMATH_FOUND)
+ foreach(_target ${_targets})
+ target_link_libraries(${_target} "quadmath")
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-DENABLE_QUADMATH=1 -D_GLIBCXX_USE_FLOAT128=1 ")
+ if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-fext-numeric-literals ")
+ endif()
+ endforeach(_target ${_targets})
+ endif(QUADMATH_FOUND)
+endfunction(add_dune_quadmath_flags)

62
packages/dune-python/FindQuadMath.cmake.patch
View File

@ -1,62 +0,0 @@
--- a/cmake/modules/FindQuadMath.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/FindQuadMath.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,59 @@
+# .. cmake_module::
+#
+# Find the GCC Quad-Precision library
+#
+# Sets the following variables:
+#
+# :code:`QUADMATH_FOUND`
+# True if the Quad-Precision library was found.
+#
+#
+
+
+# search for the header quadmath.h
+include(CheckIncludeFile)
+check_include_file(quadmath.h QUADMATH_HEADER)
+
+include(CheckCSourceCompiles)
+include(CMakePushCheckState)
+
+cmake_push_check_state() # Save variables
+set(CMAKE_REQUIRED_LIBRARIES quadmath)
+check_c_source_compiles("
+#include <quadmath.h>
+
+int main ()
+{
+ __float128 r = 1.0q;
+ r = strtoflt128(\"1.2345678\", NULL);
+ return 0;
+}" QUADMATH_COMPILES)
+cmake_pop_check_state()
+
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args(
+ "QuadMath"
+ DEFAULT_MSG
+ QUADMATH_HEADER
+ QUADMATH_COMPILES
+)
+
+# text for feature summary
+set_package_properties("QuadMath" PROPERTIES
+ DESCRIPTION "GCC Quad-Precision library")
+
+# set HAVE_QUADMATH for config.h
+set(HAVE_QUADMATH ${QUADMATH_FOUND})
+
+# -fext-numeric-literals is a GCC extension not available in other compilers like clang
+if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set(_QUADMATH_EXT_NUMERIC_LITERALS "-fext-numeric-literals")
+endif()
+
+# register all QuadMath related flags
+if(HAVE_QUADMATH)
+ dune_register_package_flags(COMPILE_DEFINITIONS "ENABLE_QUADMATH=1" "_GLIBCXX_USE_FLOAT128=1"
+ COMPILE_OPTIONS ${_QUADMATH_EXT_NUMERIC_LITERALS}
+ LIBRARIES "quadmath")
+endif()

157
packages/dune-python/package.py
View File

@ -1,157 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-python
#
# You can edit this file again by typing:
#
# spack edit dune-python
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DunePython(CMakePackage):
"""
Python bindings for the DUNE core modules
"""
homepage = "https://www.dune-project.org"
# url = "https://www.dune-project.org/download/2.6.0/dune-python-2.6.0.tar.gz"
url = 'https://gitlab.dune-project.org/staging/dune-python/-/archive/releases/2.7/dune-python-releases-2.7.tar.gz'
list_url = 'https://gitlab.dune-project.org/staging/dune-python/-/archive/releases/'
list_depth = 1
python_components = [ 'dune' ]
version('2.7', sha256='432564c8577f5d3c9e9d6b2b3710189fd3ac9551eac61986f5966d2fa2534c46')
version('2.6', sha256='cc9e9222de850eea659680e41a824bb5d7b300d0e89a8c0855f8d0a31f01ff2d')
#option
# ugggrid seems to be a requirement (does not link without)
# variant('uggrid', default=False, description='Build with dune-uggrid support')
variant('functions', default=False, description='Build with dune-functions support')
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Math Kernel library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('metis', default=True, description='Build METIS library support')
variant('parmetis', default=True, description='Build ParMETIS library support')
variant('arpack', default=True, description='Build ARnoldi PACKage library support')
variant('suitesparse', default=True, description='Build SuiteSparse library support')
variant('superlu', default=True, description='Build Supernodal LU library support')
variant('alberta', default=False, description='Build with Alberta support')
variant('psurface', default=False, description='Build with Psurface support')
variant('amiramesh', default=False, description='Build with AmiraMesh support')
variant('jupyter', default=False, description='Build with Jupyter support')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('selector', default=True, description='Grid selector definition added to config.h')
variant('oldcategory', default=True, description='Enable/Disable the backwards compatibility of the category enum/method in dune-istl solvers, preconditioner, etc.')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
variant('localfunctions', default=False, description='Support of dune-localfunctions module')
variant('functions', default=False, description='Support of dune-functions module')
variant('alugrid', default=False, description='Support of dune-alugrid module')
variant('fempy', default=False, description='Support of dune-fempy module')
variant('spgrid', default=False, description='Support of dune-spgrid module')
variant('typetree', default=False, description='Support of dune-typetree module')
extends('python')
#dependencies
depends_on('dune-grid+uggrid+python+shared')
depends_on('dune-istl+python+shared')
depends_on('dune-geometry+python+shared')
# depends_on('dune-uggrid', when='+uggrid')
depends_on('dune-uggrid+python+shared')
depends_on('dune-common+python+shared')
depends_on('dune-localfunctions+python+shared', when='+localfunctions')
depends_on('dune-functions+python+shared', when='+functions')
depends_on('dune-alugrid+python+shared', when='+alugrid')
depends_on('dune-fempy+python+shared', when='+fempy')
depends_on('dune-spgrid+python+shared', when='+spgrid')
depends_on('dune-typetree+python+shared', when='+typetree')
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.8.2:')
depends_on('py-setuptools', type='build')
depends_on('py-numpy')
depends_on('py-pip')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
depends_on('metis', when='+metis')
depends_on('parmetis', when='+parmetis')
depends_on('arpack-ng', when='+arpack')
depends_on('suite-sparse', when='+suitesparse')
depends_on('superlu', when='+superlu')
depends_on('alberta', when='+alberta')
depends_on('psurface', when='+psurface')
depends_on('amiramesh', when='+amiramesh')
depends_on('py-jupyter', when='+jupyter')
def url_for_version(self, version):
url = 'https://gitlab.dune-project.org/staging/dune-python/-/archive/releases/{1}/dune-python-releases-{1}.tar.gz'
return url.format(version.up_to(2), version)
patch('AddQuadMathFlags.cmake.patch')
patch('FindQuadMath.cmake.patch')
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DDUNE_ISTL_SUPPORT_OLD_CATEGORY=%s' % variant_bool('+oldcategory'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
# if 'python' in spec:
# cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args
@run_after('install')
def install_python_components(self):
for package in self.python_components:
build_directory = 'python'
with working_dir(join_path(self.build_directory,'python')):
setup_py('install', '--prefix={0}'.format(self.prefix))

31
packages/dune-typetree/AddQuadMathFlags.cmake.patch
View File

@ -1,31 +0,0 @@
--- a/cmake/modules/AddQuadMathFlags.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/AddQuadMathFlags.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,28 @@
+# Defines the functions to use QuadMath
+#
+# .. cmake_function:: add_dune_quadmath_flags
+#
+# .. cmake_param:: targets
+# :positional:
+# :single:
+# :required:
+#
+# A list of targets to use QuadMath with.
+#
+
+
+function(add_dune_quadmath_flags _targets)
+ if(QUADMATH_FOUND)
+ foreach(_target ${_targets})
+ target_link_libraries(${_target} "quadmath")
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-DENABLE_QUADMATH=1 -D_GLIBCXX_USE_FLOAT128=1 ")
+ if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-fext-numeric-literals ")
+ endif()
+ endforeach(_target ${_targets})
+ endif(QUADMATH_FOUND)
+endfunction(add_dune_quadmath_flags)

62
packages/dune-typetree/FindQuadMath.cmake.patch
View File

@ -1,62 +0,0 @@
--- a/cmake/modules/FindQuadMath.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/FindQuadMath.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,59 @@
+# .. cmake_module::
+#
+# Find the GCC Quad-Precision library
+#
+# Sets the following variables:
+#
+# :code:`QUADMATH_FOUND`
+# True if the Quad-Precision library was found.
+#
+#
+
+
+# search for the header quadmath.h
+include(CheckIncludeFile)
+check_include_file(quadmath.h QUADMATH_HEADER)
+
+include(CheckCSourceCompiles)
+include(CMakePushCheckState)
+
+cmake_push_check_state() # Save variables
+set(CMAKE_REQUIRED_LIBRARIES quadmath)
+check_c_source_compiles("
+#include <quadmath.h>
+
+int main ()
+{
+ __float128 r = 1.0q;
+ r = strtoflt128(\"1.2345678\", NULL);
+ return 0;
+}" QUADMATH_COMPILES)
+cmake_pop_check_state()
+
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args(
+ "QuadMath"
+ DEFAULT_MSG
+ QUADMATH_HEADER
+ QUADMATH_COMPILES
+)
+
+# text for feature summary
+set_package_properties("QuadMath" PROPERTIES
+ DESCRIPTION "GCC Quad-Precision library")
+
+# set HAVE_QUADMATH for config.h
+set(HAVE_QUADMATH ${QUADMATH_FOUND})
+
+# -fext-numeric-literals is a GCC extension not available in other compilers like clang
+if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set(_QUADMATH_EXT_NUMERIC_LITERALS "-fext-numeric-literals")
+endif()
+
+# register all QuadMath related flags
+if(HAVE_QUADMATH)
+ dune_register_package_flags(COMPILE_DEFINITIONS "ENABLE_QUADMATH=1" "_GLIBCXX_USE_FLOAT128=1"
+ COMPILE_OPTIONS ${_QUADMATH_EXT_NUMERIC_LITERALS}
+ LIBRARIES "quadmath")
+endif()

100
packages/dune-typetree/package.py
View File

@ -1,100 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-typetree
#
# You can edit this file again by typing:
#
# spack edit dune-typetree
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DuneTypetree(CMakePackage):
"""TypeTree is a template library for constructing and operating on statically typed trees of objects."""
homepage = "https://www.dune-project.org"
url = "https://gitlab.dune-project.org/staging/dune-typetree/-/archive/releases/2.7/dune-typetree-releases-2.7.tar.gz"
list_url = 'https://gitlab.dune-project.org/staging/dune-typetree/-/archive/releases/'
list_depth = 1
version('2.7', sha256='b546c2588576d4e8b22e675865628734f2f3d9a8688255742d099f41e5db574e')
version('2.6', sha256='a5d78b00ff45a30163062812c8c85f18091b6874df72ceadb9c5c718e0db07de')
version('2.5', sha256='7596858584e6805db9db701baa6362bbda0607fe19163c99a69ffa3335eee7a2')
#option
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Math Kernel library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('oldcategory', default=True, description='Enable/Disable the backwards compatibility of the category enum/method in dune-istl solvers, preconditioner, etc.')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
#dependencies
depends_on('dune-common+shared')
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.8.2:')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
def url_for_version(self, version):
url = 'https://gitlab.dune-project.org/staging/dune-typetree/-/archive/releases/{1}/dune-typetree-releases-{1}.tar.gz'
return url.format(version.up_to(2), version)
patch('AddQuadMathFlags.cmake.patch')
patch('FindQuadMath.cmake.patch')
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
if 'python' in spec:
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args

31
packages/dune-uggrid/AddQuadMathFlags.cmake.patch
View File

@ -1,31 +0,0 @@
--- a/cmake/modules/AddQuadMathFlags.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/AddQuadMathFlags.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,28 @@
+# Defines the functions to use QuadMath
+#
+# .. cmake_function:: add_dune_quadmath_flags
+#
+# .. cmake_param:: targets
+# :positional:
+# :single:
+# :required:
+#
+# A list of targets to use QuadMath with.
+#
+
+
+function(add_dune_quadmath_flags _targets)
+ if(QUADMATH_FOUND)
+ foreach(_target ${_targets})
+ target_link_libraries(${_target} "quadmath")
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-DENABLE_QUADMATH=1 -D_GLIBCXX_USE_FLOAT128=1 ")
+ if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set_property(TARGET ${_target}
+ APPEND_STRING
+ PROPERTY COMPILE_FLAGS "-fext-numeric-literals ")
+ endif()
+ endforeach(_target ${_targets})
+ endif(QUADMATH_FOUND)
+endfunction(add_dune_quadmath_flags)

62
packages/dune-uggrid/FindQuadMath.cmake.patch
View File

@ -1,62 +0,0 @@
--- a/cmake/modules/FindQuadMath.cmake 2020-03-24 07:54:22.548925006 +0100
+++ b/cmake/modules/FindQuadMath.cmake.patched 2020-03-24 22:53:43.127262894 +0100
@@ -0,0 +1,59 @@
+# .. cmake_module::
+#
+# Find the GCC Quad-Precision library
+#
+# Sets the following variables:
+#
+# :code:`QUADMATH_FOUND`
+# True if the Quad-Precision library was found.
+#
+#
+
+
+# search for the header quadmath.h
+include(CheckIncludeFile)
+check_include_file(quadmath.h QUADMATH_HEADER)
+
+include(CheckCSourceCompiles)
+include(CMakePushCheckState)
+
+cmake_push_check_state() # Save variables
+set(CMAKE_REQUIRED_LIBRARIES quadmath)
+check_c_source_compiles("
+#include <quadmath.h>
+
+int main ()
+{
+ __float128 r = 1.0q;
+ r = strtoflt128(\"1.2345678\", NULL);
+ return 0;
+}" QUADMATH_COMPILES)
+cmake_pop_check_state()
+
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args(
+ "QuadMath"
+ DEFAULT_MSG
+ QUADMATH_HEADER
+ QUADMATH_COMPILES
+)
+
+# text for feature summary
+set_package_properties("QuadMath" PROPERTIES
+ DESCRIPTION "GCC Quad-Precision library")
+
+# set HAVE_QUADMATH for config.h
+set(HAVE_QUADMATH ${QUADMATH_FOUND})
+
+# -fext-numeric-literals is a GCC extension not available in other compilers like clang
+if(${CMAKE_CXX_COMPILER_ID} STREQUAL GNU)
+ set(_QUADMATH_EXT_NUMERIC_LITERALS "-fext-numeric-literals")
+endif()
+
+# register all QuadMath related flags
+if(HAVE_QUADMATH)
+ dune_register_package_flags(COMPILE_DEFINITIONS "ENABLE_QUADMATH=1" "_GLIBCXX_USE_FLOAT128=1"
+ COMPILE_OPTIONS ${_QUADMATH_EXT_NUMERIC_LITERALS}
+ LIBRARIES "quadmath")
+endif()

110
packages/dune-uggrid/package.py
View File

@ -1,110 +0,0 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune-uggrid
#
# You can edit this file again by typing:
#
# spack edit dune-uggrid
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
from spack import *
class DuneUggrid(CMakePackage):
"""
dune-uggrid is a fork of the old UG finite element software, wrapped
as a Dune module, and stripped of everything but the grid data
structure.
You need this module if you want to use the UGGrid grid
implementation from dune-grid.
"""
homepage = "https://www.dune-project.org"
url = "https://github.com/dune-mirrors/dune-uggrid/archive/v2.6.0.tar.gz"
version('2.7.0', sha256='bcf4afd386f23cdb7f7ba16cc2fec4918c4afb516761ef7905af8378ea86eb4c')
version('2.6.0', sha256='3da75c672c151ca711526f2c0619d6f1ebf8f489c972066ee3b43252ea8daed4')
version('2.5.2', sha256='3a484376e625fff880ff9db6be53ccca0080c5ce7229ed31c09e09fa4a4a4afa')
version('2.5.1', sha256='55ccb3a4b4aad0c22c2cda6fa2b50325caf5c4493a9e033562fc03cf5a3b3f61')
version('2.5.0', sha256='b7f5ac061b6d5f30e22a2acfff205a3fc4751f57f1e301db83c66da2b9105bc9')
#option
variant('blas', default=True, description='Build with BLAS support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('mkl', default=True, description='Build with Math Kernel library support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('2d', default=True, description='Build library for 2d')
variant('3d', default=True, description='Build library for 3d')
variant('threads', default=True, description='Activate pThread support')
variant('shared', default=True, description='Enables the build of shared libraries.')
variant('python', default=True, description='Build with Python')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('selector', default=True, description='Grid selector definition added to config.h')
#dependencies
depends_on('dune-common')
depends_on('cmake@3.1:', type='build')
depends_on('cmake@2.8.12:', when='@2.6', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.0:')
depends_on('py-sphinx', type='build', when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
patch('parallel_CMakeList.patch', when='@2.6')
patch('AddQuadMathFlags.cmake.patch')
patch('FindQuadMath.cmake.patch')
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
if 'python' in spec:
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
if self.spec.variants['build_type'].value == 'Debug':
cmake_args.append('UG_ENABLE_DEBUGGING:BOOL=True')
cmake_args.append('-DUG_ENABLE_2D:BOOL=%s' % variant_bool('+2d'))
cmake_args.append('-DUG_ENABLE_3D:BOOL=%s' % variant_bool('+3d'))
return cmake_args

12
packages/dune-uggrid/parallel_CMakeList.patch
View File

@ -1,12 +0,0 @@
--- a/parallel/CMakeLists.txt 2020-03-24 23:00:09.873941559 +0100
+++ b/parallel/CMakeLists.txt.patched 2020-03-24 23:11:41.287296340 +0100
@@ -3,7 +3,8 @@
# Maybe dune-common should export them?
add_definitions(-DENABLE_MPI=1 -DMPICH_SKIP_MPICXX -DMPIPP_H)
include_directories("${MPI_DUNE_INCLUDE_PATH}")
- set_property(DIRECTORY APPEND PROPERTY COMPILE_OPTIONS "${MPI_DUNE_COMPILE_FLAGS}")
+ separate_arguments(MPI_DUNE_COMPILE_FLAGS UNIX_COMMAND "${MPI_DUNE_COMPILE_FLAGS}")
+ set_property(DIRECTORY APPEND PROPERTY COMPILE_OPTIONS ${MPI_DUNE_COMPILE_FLAGS})
ug_add_dim_libs(parallel OBJECT initparallel.cc) # OBJECT_DIM_LIBS ddd dddif)
endif()

306
packages/dune/package.py Normal file
View File

@ -0,0 +1,306 @@
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
# ----------------------------------------------------------------------------
# If you submit this package back to Spack as a pull request,
# please first remove this boilerplate and all FIXME comments.
#
# This is a template package file for Spack. We've put "FIXME"
# next to all the things you'll want to change. Once you've handled
# them, you can save this file and test your package like this:
#
# spack install dune
#
# You can edit this file again by typing:
#
# spack edit dune
#
# See the Spack documentation for more information on packaging.
# ----------------------------------------------------------------------------
import os
from spack import *
class Dune(CMakePackage):
"""
DUNE, the Distributed and Unified Numerics Environment is a modular toolbox for solving partial differential equations (PDEs) with grid-based methods.
"""
homepage = "https://www.dune-project.org"
url = "https://www.dune-project.org/download/2.7.0/dune-common-2.7.0.tar.gz"
list_url = "https://www.dune-project.org/download/"
list_depth = 1
python_components = [ 'dune' ]
version('2.7.0', sha256='3c83c583a45325513113148cb94bd978e601907a6591c765f6253342e00f1890', expand=False)
variant('2d', default=True, description='Build library for 2d')
variant('3d', default=True, description='Build library for 3d')
variant('alberta', default=False, description='Build with Alberta support')
variant('amiramesh', default=False, description='Build with AmiraMesh support')
variant('arpack', default=True, description='Build ARnoldi PACKage library support')
variant('blas', default=True, description='Build with BLAS support')
variant('doxygen', default=True, description='Create Doxygen documentation')
variant('extrautils', default=True, description='Enable compilation and installation of extra utilities from the src subdirectory')
variant('fempy', default=False, description='Support of dune-fempy module')
variant('gmp', default=True, description='Build with GNU multi-precision library support')
variant('imagemagick', default=False, description='Imagemagick support')
variant('jupyter', default=False, description='Build with Jupyter support')
variant('lapack', default=True, description='Build with LAPACK support')
variant('metis', default=True, description='Build with METIS library support')
variant('mkl', default=True, description='Build with Math Kernel library support')
variant('tbb', default=True, description='Build with Threading Building Blocks library support')
variant('oldcategory', default=True, description='Enable/Disable the backwards compatibility of the category enum/method in dune-istl solvers, preconditioner, etc.')
variant('parmetis', default=True, description='Build with ParMETIS support')
variant('psurface', default=False, description='Build with Psurface support')
variant('ptscotch', default=True, description='Build with PT-Scotch support')
variant('selector', default=True, description='Grid selector definition added to config.h')
variant('shared', default=True, description='Enables the build of shared libraries.')
variant('sionlib', default=False, description='Build with SIONlib support')
variant('sphinx', default=True, description='Create Sphinx documentation')
variant('suitesparse', default=True, description='Build SuiteSparse library support')
variant('superlu', default=True, description='Build Supernodal LU library support')
variant('threads', default=True, description='Activate pThread support')
variant('vc', default=True, description='Build C++ Vectorization library support')
variant('zlib', default=True, description='Build zlib library support')
variant('zoltan', default=True, description='Build with Zoltan support')
variant('alugrid', default=False, description='Build with dune-alugrid module')
variant('corepy', default=False, description='Build with dune-corepy module')
variant('functions', default=False, description='Build with dune-functions module')
variant('geometry', default=False, description='Build with dune-geometry module')
variant('grid', default=False, description='Build with dune-grid module')
variant('istl', default=False, description='Build with dune-istl module')
variant('localfunctions', default=False, description='Build with dune-localfunctions module')
variant('python', default=False, description='Build with Python and dune-python')
variant('spgrid', default=False, description='Build with dune-spgrid module')
variant('typetree', default=False, description='Build with dune-typetree module')
variant('uggrid', default=False, description='Build with dune-uggrid module')
#Dune common module
resource(
name='dune-common',
git='https://gitlab.dune-project.org/core/dune-common.git',
branch='releases/2.7',
)
#Dune geometry module
resource(
name='dune-geometry',
git='https://gitlab.dune-project.org/core/dune-geometry.git',
branch='releases/2.7',
when='+geometry')
#Dune grid module
resource(
name='dune-grid',
git='https://gitlab.dune-project.org/core/dune-grid.git',
branch='releases/2.7',
when='+grid')
#Dune uggrid module
resource(
name='dune-uggrid',
git='https://gitlab.dune-project.org/staging/dune-uggrid.git',
branch='releases/2.7',
when='+uggrid')
#Dune istl module
resource(
name='dune-istl',
git='https://gitlab.dune-project.org/core/dune-istl.git',
branch='releases/2.7',
when='+istl')
#Dune localfunctions module
resource(
name='dune-localfunctions',
git='https://gitlab.dune-project.org/core/dune-localfunctions.git',
branch='releases/2.7',
when='+localfunctions')
#Dune functions module
resource(
name='dune-functions',
git='https://gitlab.dune-project.org/staging/dune-functions.git',
branch='releases/2.7',
when='+functions')
#Dune module
resource(
name='dune-python',
git='https://gitlab.dune-project.org/staging/dune-python.git',
branch='releases/2.7',
when='+python')
#Dune module
resource(
name='dune-typetree',
git='https://gitlab.dune-project.org/staging/dune-typetree.git',
branch='releases/2.7',
when='+typetree')
#Dune module
resource(
name='dune-alugrid',
git='https://gitlab.dune-project.org/extensions/dune-alugrid.git',
branch='releases/2.7',
when='+alugrid')
#Dependence between modules
module_dependencies={"dune-common":[]}
module_dependencies["dune-geometry"]=["dune-common"]
module_dependencies["dune-grid"]=["dune-common","dune-geometry"]
module_dependencies["dune-uggrid"]=["dune-common"]
module_dependencies["dune-istl"]=["dune-common"]
module_dependencies["dune-localfunctions"]=["dune-common","dune-geometry"]
module_dependencies["dune-functions"]=["dune-grid","dune-typetree","dune-localfunctions","dune-istl"]
module_dependencies["dune-typetree"]=["dune-common"]
module_dependencies["dune-python"]=[]
module_dependencies["dune-alugrid"]=["dune-grid","dune-geometry","dune-common"]
def build_module_list(self,module_list,name):
if name in self.module_dependencies.keys():
for dep in self.module_dependencies[name]:
self.build_module_list(module_list,dep)
module_list.append(name)
return
extends('python')
#option
depends_on('cmake@3.1:', type='build')
depends_on('mpi')
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('doxygen', type='build', when='+doxygen')
depends_on('gmp', when='+gmp')
depends_on('intel-tbb', when='+tbb')
depends_on('intel-mkl', when='+mkl')
depends_on('python@3.0:', type=('build', 'run'), when='+python')
depends_on('py-setuptools', type='build')
depends_on('py-jupyter', type=('build', 'run'), when='+jupyter')
depends_on('py-numpy', type=('build', 'run'), when='+python')
depends_on('py-pip', type=('build', 'run'), when='+python')
depends_on('py-sphinx', type=('build', 'run'), when='+sphinx')
depends_on('vc', when='+vc')
depends_on('pkg-config', type='build')
depends_on('imagemagick', type='build', when='+imagemagick')
depends_on('metis', when='+metis')
depends_on('parmetis', when='+parmetis')
depends_on('arpack-ng', when='+arpack')
depends_on('suite-sparse', when='+suitesparse')
depends_on('superlu', when='+superlu')
depends_on('alberta', when='+alberta')
depends_on('psurface', when='+psurface')
depends_on('amiramesh', when='+amiramesh')
depends_on('sionlib', when='+sionlib')
depends_on('zlib', when='+zlib')
depends_on('scotch+mpi', when='+ptscotch')
depends_on('zoltan', when='+zoltan')
def url_for_version(self, version):
url = "https://www.dune-project.org/download/{1}/dune-common-{1}.tar.gz"
return url.format(version.up_to(2), version)
def cmake_args(self):
"""Populate cmake arguments."""
spec = self.spec
def variant_bool(feature, on='ON', off='OFF'):
"""Ternary for spec variant to ON/OFF string"""
if feature in spec:
return on
return off
def nvariant_bool(feature):
"""Negated ternary for spec variant to OFF/ON string"""
return variant_bool(feature, on='OFF', off='ON')
cmake_args = [
# '-DDUNE_BUILD_BOTH_LIBS=%s' % variant_bool('+shared'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % variant_bool('+shared'),
'-DDUNE_GRID_EXTRA_UTILS:BOOL=%s' % variant_bool('+extrautils'),
'-DDUNE_GRID_GRIDTYPE_SELECTOR:BOOL=%s' % variant_bool('+selector'),
'-DDUNE_ISTL_SUPPORT_OLD_CATEGORY=%s' % variant_bool('+oldcategory'),
'-DUSE_PTHREADS:BOOL=%s' % variant_bool('+threads'),
]
#self.define_from_variant('DETECT_HDF5', 'hdf5'),
if '+python' in spec:
cmake_args.append('-DDUNE_GRID_EXPERIMENTAL_GRID_EXTENSIONS:BOOL=TRUE')
cmake_args.append('-DPYTHON_INSTALL_LOCATION:STRING="system"')
return cmake_args
def _get_needed_resources(self):
# for variant, resource_list in self.resources.items():
resources = []
# Select the resources that are needed for this build
if self.spec.concrete:
module_list=[]
for when_spec, resource_list in self.resources.items():
if when_spec in self.spec:
for res in resource_list:
dune_module=res.name
self.build_module_list(module_list,dune_module)
# resources.extend(resource_list)
module_list = list(dict.fromkeys(module_list))
for when_spec, resource_list in self.resources.items():
for res in resource_list:
if(res.name in module_list):
resources.extend(resource_list)
else:
for when_spec, resource_list in self.resources.items():
# Note that variant checking is always strict for specs where
# the name is not specified. But with strict variant checking,
# only variants mentioned in 'other' are checked. Here we only
# want to make sure that no constraints in when_spec
# conflict with the spec, so we need to invoke
# when_spec.satisfies(self.spec) vs.
# self.spec.satisfies(when_spec)
if when_spec.satisfies(self.spec, strict=False):
resources.extend(resource_list)
# Sorts the resources by the length of the string representing their
# destination. Since any nested resource must contain another
# resource's name in its path, it seems that should work
resources = sorted(resources, key=lambda res: len(res.destination))
return resources
def cmake(self, spec, prefix):
os.remove(self.stage.archive_file)
optFile = open(self.stage.source_path+"/../dune.opts", "w")
optFile.write('CMAKE_FLAGS="')
for flag in self.cmake_args():
optFile.write(flag.replace("\"", "'")+" ")
optFile.write('-DCMAKE_INSTALL_PREFIX=%s' % prefix)
optFile.write('"')
optFile.close()
set_executable('dune-common/bin/dunecontrol')
installer = Executable('dune-common/bin/dunecontrol')
options_file=self.stage.source_path+"/../dune.opts"
installer('--builddir=%s'%self.build_directory , '--opts=%s' % options_file, 'cmake')
pass
def install(self, spec, prefix):
set_executable('dune-common/bin/dunecontrol')
installer = Executable('dune-common/bin/dunecontrol')
options_file=self.stage.source_path+"/../dune.opts"
installer('--builddir=%s'%self.build_directory , '--opts=%s' % options_file, 'make', 'install')
pass
def build(self, spec, prefix):
set_executable('dune-common/bin/dunecontrol')
installer = Executable('dune-common/bin/dunecontrol')
options_file=self.stage.source_path+"/../dune.opts"
installer('--builddir=%s'%self.build_directory , '--opts=%s' % options_file, 'make')
pass
@run_after('install')
def install_python_components(self):
if '+python' in self.spec:
for package in self.python_components:
build_directory = 'dune-python/python'
with working_dir(join_path(self.build_directory,'dune-python/python')):
setup_py('install', '--prefix={0}'.format(self.prefix))