bug remove for GPU run after CPU MPI parallelization

- specialization of VectorSingle for word
- dummyFile creation to solve write to file in MPI mode
This commit is contained in:
Hamidreza Norouzi
2024-05-18 18:40:25 +03:30
parent 614b2f732e
commit 4e8b921514
69 changed files with 1124 additions and 490 deletions

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#include "stlFile.hpp"
#include "iFstream.hpp"
#include "oFstream.hpp"
#include "error.hpp"
namespace pFlow
{
inline bool badInput(iIstream& is, token& tok )
{
return is.bad() || !tok.good();
}
inline bool checkWordToken(iIstream& is, token& tok, const word& check)
{
if( badInput(is, tok) || is.eof() || !tok.isWord() || tok.wordToken() != check ) return false;
return true;
}
inline bool checkNumberToken(iIstream& is, token& tok, real& val)
{
if(badInput(is, tok) || is.eof() || !tok.isNumber() )return false;
val = tok.number();
return true;
}
}
bool pFlow::stlFile::readSolid
(
iIstream& is,
realx3x3Vector & vertecies,
word & name
)
{
token tok;
is>> tok;
if(!checkWordToken(is, tok, "solid")) return false;
// check if there is a name associated with solid
name = "";
int32 nWords =0;
bool reachedFacet = false;
is >> tok;
while (nWords < 20 )
{
if( badInput(is, tok) ) return false;
//if(!tok.isWord()) return false;
nWords++;
if(tok.isWord() && tok.wordToken() != "facet" )
{
name += tok.wordToken();
}
else if( tok.isNumber())
{
auto val = tok.number();
name += real2Word(val);
}
else if( tok.isPunctuation())
{
name += tok.pToken();
}
else if (tok.isWord() && tok.wordToken() == "facet")
{
is.putBack(tok);
reachedFacet = true;
break;
}
else
{
return false;
}
is >> tok;
}
if(!reachedFacet) return false;
vertecies.clear();
while(true )
{
is>>tok;
if( badInput(is,tok) || !tok.isWord() )return false;
word wTok = tok.wordToken();
if( wTok == "endsolid" ) return true; // end of solid
if( wTok != "facet" ) return false;
// read facet
is.putBack(tok);
realx3x3 tri;
if( !readFacet(is, tri) ) return false;
vertecies.push_back(tri);
}
return true;
}
bool pFlow::stlFile::readFacet
(
iIstream& is,
realx3x3& tri
)
{
token tok;
is>>tok;
if( !checkWordToken(is, tok, "facet") ) return false;
is >> tok;
if( !checkWordToken(is, tok , "normal") ) return false;
real val;
for(uint32 i=0; i<3; i++ )
{
is>>tok;
if( !checkNumberToken(is, tok, val))return false;
}
is>> tok;
if( !checkWordToken(is, tok, "outer")) return false;
is>> tok;
if(!checkWordToken(is, tok, "loop")) return false;
realx3 v;
for(uint32 i=0; i<3; i++)
{
is>>tok;
if(!checkWordToken(is, tok, "vertex")) return false;
is>>tok;
if(!checkNumberToken(is, tok, v.x()))return false;
is>>tok;
if(!checkNumberToken(is, tok, v.y()))return false;
is>>tok;
if(!checkNumberToken(is, tok, v.z()))return false;
if( i==0 ) tri.x() = v;
if( i==1 ) tri.y() = v;
if( i==2) tri.z() = v;
}
is>> tok;
if(!checkWordToken(is, tok, "endloop")) return false;
is>> tok;
if(!checkWordToken(is, tok, "endfacet")) return false;
return true;
}
bool pFlow::stlFile::writeFacet
(
iOstream& os,
const realx3x3& tri
)const
{
realx3 n = cross( tri.y() - tri.x(), tri.z()-tri.x());
n.normalize();
os.incrIndent();
indent(os) << "facet" << spaceToken()
<< "normal"<<spaceToken()
<< n.x() << spaceToken()
<< n.y() << spaceToken()
<< n.z() << endl;
os.incrIndent();
indent(os) << "outer loop"<<endl;
os.incrIndent();
indent(os) << "vertex"<< spaceToken()
<< tri.x().x() << spaceToken()
<< tri.x().y() << spaceToken()
<< tri.x().z() << endl;
indent(os) << "vertex"<< spaceToken()
<< tri.y().x() << spaceToken()
<< tri.y().y() << spaceToken()
<< tri.y().z() << endl;
indent(os) << "vertex"<< spaceToken()
<< tri.z().x() << spaceToken()
<< tri.z().y() << spaceToken()
<< tri.z().z() << endl;
os.decrIndent();
indent(os) << "endloop"<<endl;
os.decrIndent();
indent(os)<< "endfacet"<<endl;
os.decrIndent();
return true;
}
bool pFlow::stlFile::writeSolid
(
iOstream& os,
const realx3x3Vector& vertecies,
const word& name
)const
{
os<< "solid"<<spaceToken()<<name<<endl;
for(const auto& tri: vertecies)
{
writeFacet(os, tri);
}
os<< "endsolid"<<endl;
return true;
}
pFlow::stlFile::stlFile( fileSystem file )
:
file_(file)
{
}
pFlow::stlFile::stlFile
(
fileSystem file,
const word& name,
const realx3x3Vector& vertecies
)
:
stlFile(file)
{
addSolid(name, vertecies);
}
pFlow::stlFile::stlFile
(
fileSystem file,
const word& name,
realx3x3Vector&& vertecies
)
:
stlFile(file)
{
addSolid(name, vertecies);
}
void pFlow::stlFile::addSolid
(
const word& name,
const realx3x3Vector& vertecies
)
{
solids_.push_back(makeUnique<realx3x3Vector>(vertecies));
solidNames_.push_back(name);
}
void pFlow::stlFile::addSolid
(
const word& name,
realx3x3Vector&& vertecies
)
{
solids_.push_back(makeUnique<realx3x3Vector>(vertecies));
solidNames_.push_back(name);
}
bool pFlow::stlFile::read()
{
solids_.clear();
solidNames_.clear();
// open file
iFstream is(file_);
token tok;
while (true)
{
realx3x3Vector vertecies;
word name;
if(!readSolid(is, vertecies, name))
{
ioErrorInFile(is.name(), is.lineNumber());
return false;
}
addSolid(name, std::move(vertecies));
is >> tok;
if( is.eof() || !tok.good())return true;
is.putBack(tok);
}
return true;
}
bool pFlow::stlFile::write()const
{
oFstream os(file_);
os.precision(8);
for(size_t i=0; i<size(); i++)
{
writeSolid(os, solids_[i], solidNames_[i]);
}
return true;
}
void pFlow::stlFile::setFile
(
fileSystem file
) const
{
file_ = file;
}
const pFlow::wordList& pFlow::stlFile::names()const
{
return solidNames_;
}
size_t pFlow::stlFile::size()const
{
return solids_.size();
}
const pFlow::realx3x3Vector& pFlow::stlFile::solid
(
size_t i
)const
{
if(i >= size() )
{
fatalErrorInFunction<<
"requested out of range solid from stlFile "<<
file_<<endl;
fatalExit;
}
return solids_[i];
}
const pFlow::word& pFlow::stlFile::name
(
size_t i
)const
{
if(i >= size() )
{
fatalErrorInFunction<<
"requested out of range solid name from stlFile "<<
file_<<endl;
fatalExit;
}
return solidNames_[i];
}

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#ifndef __stlFile_hpp__
#define __stlFile_hpp__
#include "types.hpp"
#include "Vectors.hpp"
#include "Lists.hpp"
#include "fileSystem.hpp"
namespace pFlow
{
class iIstream;
class stlFile
{
protected:
//// - data memebrs
// - list of verticies of all solids
ListPtr<realx3x3Vector> solids_;
// - list of names of all solids
wordList solidNames_;
// - file name of stl file (used for reading and writing)
mutable fileSystem file_;
// - protected members
bool readSolid(iIstream& is, realx3x3Vector & vertecies, word & name);
bool readFacet(iIstream& is, realx3x3& tri);
bool writeSolid(iOstream& os, const realx3x3Vector& vertecies, const word& name)const;
bool writeFacet(iOstream& os, const realx3x3& tri)const;
public:
//// - Constructors
// - construct with file name
// an empty stlFile
stlFile( fileSystem file );
// - construct with file name and one solid (copy)
stlFile( fileSystem file, const word& name, const realx3x3Vector& vertecies);
// - construct with file name and one solid (copy)
stlFile( fileSystem file, const word& name, realx3x3Vector&& vertecies);
// - copy construct
stlFile(const stlFile&) = default;
// - move construct
stlFile(stlFile&&) = default;
~stlFile() = default;
//// - Methods
// - add a solid at the end of list, with copy operation
void addSolid(const word& name, const realx3x3Vector& vertecies);
// - add a solid at the end of list, with move operation
void addSolid(const word& name, realx3x3Vector&& vertecies);
// - clear current content and read from file
bool read();
// - write the current contnet to file
bool write()const;
// - set stl file path
void setFile(fileSystem file) const;
// - name of solids
const wordList& names()const;
// - number of solids
size_t size()const;
// - vertecies of ith solid
const realx3x3Vector& solid(size_t i)const;
// - name of ith solid
const word& name(size_t i)const;
};
} // pFlow
#endif //__stlFile_hpp__