doc styles changed

doc/Doxyfile

@@ -822,8 +822,7 @@ WARN_LOGFILE           =
 INPUT                  = $(pFlow_PROJECT_DIR)/src \
                          $(pFlow_PROJECT_DIR)/utilities \
                          $(pFlow_PROJECT_DIR)/solvers \
-                         mdDocs \
-                         $(pFlow_PROJECT_DIR)/tutorials
+                         mdDocs
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -1217,7 +1216,7 @@ HTML_EXTRA_FILES       =
 # Minimum value: 0, maximum value: 359, default value: 220.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_COLORSTYLE_HUE    = 134
+HTML_COLORSTYLE_HUE    = 200
 
 # The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of the colors
 # in the HTML output. For a value of 0 the output will use grayscales only. A
@@ -1264,7 +1263,7 @@ HTML_DYNAMIC_MENUS     = YES
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_DYNAMIC_SECTIONS  = NO
+HTML_DYNAMIC_SECTIONS  = YES
 
 # With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
 # shown in the various tree structured indices initially; the user can expand

doc/customdoxygen.css

@@ -21,14 +21,16 @@
     font-size: 220%;
 }
 
+
 #projectname a
 {
+    text-decoration: none;
     color: rgba(0, 0, 0, 0.75);
 }
 
 #projectname a:hover, #projectbrief a:hover
 {
-    text-decoration: none;
+    text-decoration: underline;
     color: rgba(0, 0, 0, 1);
 }
 

doc/header.html

@@ -28,10 +28,10 @@ $extrastylesheet
   <!--END PROJECT_LOGO-->
   <!--BEGIN PROJECT_NAME-->
   <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname"><a href="https://cemf.ir">$projectname</a>
-   <!--BEGIN PROJECT_NUMBER-->&#160;<span id="projectnumber"><a href="https://cemf.ir">$projectnumber</a></span><!--END PROJECT_NUMBER-->
+   <div id="projectname"><a href="www.github.com/PhasicFlow">$projectname</a>
+   <!--BEGIN PROJECT_NUMBER-->&#160;<span id="projectnumber"><a href="www.github.com/PhasicFlow">$projectnumber</a></span><!--END PROJECT_NUMBER-->
    </div>
-   <!--BEGIN PROJECT_BRIEF--><div id="projectbrief"><a href="www.github.com/PhasicFlow">$projectbrief</a></div><!--END PROJECT_BRIEF-->
+   <!--BEGIN PROJECT_BRIEF--><div id="projectbrief"><a href="https://cemf.ir">$projectbrief</a></div><!--END PROJECT_BRIEF-->
   </td>
   <!--END PROJECT_NAME-->
   <!--BEGIN !PROJECT_NAME-->

doc/mdDocs/howToUsePhasicFlow.md

@@ -2,4 +2,18 @@
 Here you will learn how to use PhasicFlow to setup a granular flow simulation. The inputs for simulation are supplied through some text-based files, called file dictionary, located in two folders: `settings` and `caseSetup`. These folders are located under the root case directory. 
 All the commands are performed through terminal in which the current working directory is root case directory (you see `settings` and `caseSetup` folders when `ls` command is entered). The states of geometry and particles are stored in time folders with names that represent the time. When simulation is finished, one case use post-processing tool pFlowToVTK to convert the stored results in the time folder into VTK file format. The VTK file format can be read by Paraview. 
 A set of tutorials with detailed descriptions are provided to show you how to use PhasicFlow for various granular flow problems. Here is a list of them.
-* [Small rotating drum] (@ref rotatingDrumSmall)
+* Tutorials based on sphereGranFlow solver 
+	* Small rotating drum [(see on github.com)](https://github.com/PhasicFlow/phasicFlow/tree/main/tutorials/sphereGranFlow/rotatingDrumSmall)
+	* Rotating drum with baffles [(see on github.com)](https://github.com/PhasicFlow/phasicFlow/tree/main/tutorials/sphereGranFlow/RotatingDrumWithBaffles)
+	* Layered silo filling [(see on github.com)](https://github.com/PhasicFlow/phasicFlow/tree/main/tutorials/sphereGranFlow/layeredSiloFilling)
+	* Simulation of a V-blender [(see on github.com)](https://github.com/PhasicFlow/phasicFlow/tree/main/tutorials/sphereGranFlow/V-blender)
+	* Granular flow of particles with two particlce sizes[(see on github.com)](https://github.com/PhasicFlow/phasicFlow/tree/main/tutorials/sphereGranFlow/binarySystemOfParticles)
+	* Simulation of a tote-blender [(see on github.com)](https://github.com/PhasicFlow/phasicFlow/tree/main/tutorials/sphereGranFlow/toteblender)
+
+* Tutorials based on iterateGeometry solver
+	* Defining an inclined screw conveyor [(see on github.com)](https://github.com/PhasicFlow/phasicFlow/tree/main/tutorials/iterateGeometry/inclinedScrewConveyor)
+
+* Tutorials based on postprocessPhasicFlow 
+	* Particle number fraction in a binray system [(see on github.com)](https://github.com/PhasicFlow/phasicFlow/tree/main/tutorials/postprocessPhasicFlow/segregation)
+	
+