src folder

This commit is contained in:
hamidrezanorouzi
2022-09-05 01:56:29 +04:30
parent 9d177aba28
commit ac5c3f08af
97 changed files with 11707 additions and 13 deletions

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list(APPEND SourceFiles
geometry/geometry.C
geometryMotion/geometryMotions.C
)
set(link_libs Kokkos::kokkos phasicFlow MotionModel Property)
pFlow_add_library_install(Geometry SourceFiles link_libs)

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#ifndef __demGeometry_H__
#define __demGeometry_H__
#include "demComponent.H"
namespace pFlow
{
class demGeometry
:
public demComponent
{
public:
demGeometry(systemControl& control)
:
demComponent("geometry", control)
{}
};
}
#endif

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#include "geometry.H"
#include "vocabs.H"
bool pFlow::geometry::findPropertyId()
{
int8Vector propId(0, surface().capacity(),RESERVE());
propId.clear();
uint32 pId;
forAll(matI, materialName_)
{
if( !wallProperty_.nameToIndex( materialName_[matI], pId ) )
{
fatalErrorInFunction<<
"material name for the geometry is invalid: "<< materialName_[matI]<<endl;
return false;
}
int32 surfSize = surface().surfNumTriangles(matI);
for(int32 i=0; i<surfSize; i++)
{
propId.push_back(pId);
}
}
propertyId_.assign(propId);
return true;
}
pFlow::geometry::geometry
(
systemControl& control,
const property& prop
)
:
demGeometry(control),
wallProperty_(prop),
geometryRepository_(control.geometry()),
triSurface_(
control.geometry().emplaceObject<multiTriSurface>(
objectFile(
"triSurface",
"",
objectFile::READ_ALWAYS,
objectFile::WRITE_ALWAYS
)
)
),
motionComponentName_(
control.geometry().emplaceObject<wordField>(
objectFile(
"motionComponentName",
"",
objectFile::READ_ALWAYS,
objectFile::WRITE_ALWAYS
),
"motionNamesList"
)
),
materialName_(
control.geometry().emplaceObject<wordField>(
objectFile(
"materialName",
"",
objectFile::READ_ALWAYS,
objectFile::WRITE_ALWAYS
),
"materialNamesList"
)
),
propertyId_(
control.geometry().emplaceObject<int8TriSurfaceField_D>(
objectFile(
"propertyId",
"",
objectFile::READ_NEVER,
objectFile::WRITE_NEVER),
surface(),
0 ) ),
contactForceWall_(
control.geometry().emplaceObject<realx3TriSurfaceField_D>(
objectFile(
"contactForceWall",
"",
objectFile::READ_IF_PRESENT,
objectFile::WRITE_ALWAYS),
surface(),
zero3) ),
stressWall_(
control.geometry().emplaceObject<realx3TriSurfaceField_D>(
objectFile(
"stressWall",
"",
objectFile::READ_IF_PRESENT,
objectFile::WRITE_ALWAYS),
surface(),
zero3) )
{
if(!findPropertyId())
{
fatalExit;
}
}
pFlow::geometry::geometry
(
systemControl& control,
const property& prop,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& matName
)
:
demGeometry(control),
wallProperty_(prop),
geometryRepository_(control.geometry()),
triSurface_(
control.geometry().emplaceObject<multiTriSurface>(
objectFile(
"triSurface",
"",
objectFile::READ_NEVER,
objectFile::WRITE_ALWAYS
),
triSurface
)
),
motionComponentName_(
control.geometry().emplaceObject<wordField>(
objectFile(
"motionComponentName",
"",
objectFile::READ_NEVER,
objectFile::WRITE_ALWAYS
),
"motionNamesList",
motionCompName
)
),
materialName_(
control.geometry().emplaceObject<wordField>(
objectFile(
"materialName",
"",
objectFile::READ_NEVER,
objectFile::WRITE_ALWAYS
),
"materialNamesList",
matName
)
),
propertyId_(
control.geometry().emplaceObject<int8TriSurfaceField_D>(
objectFile(
"propertyId",
"",
objectFile::READ_NEVER,
objectFile::WRITE_NEVER),
surface(),
0 ) ),
contactForceWall_(
control.geometry().emplaceObject<realx3TriSurfaceField_D>(
objectFile(
"contactForceWall",
"",
objectFile::READ_IF_PRESENT,
objectFile::WRITE_ALWAYS),
surface(),
zero3) ),
stressWall_(
control.geometry().emplaceObject<realx3TriSurfaceField_D>(
objectFile(
"stressWall",
"",
objectFile::READ_IF_PRESENT,
objectFile::WRITE_ALWAYS),
surface(),
zero3) )
{
if(!findPropertyId())
{
fatalExit;
}
}
pFlow::geometry::geometry
(
systemControl& control,
const property& prop,
const dictionary& dict,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& matName
)
:
geometry(control, prop, triSurface, motionCompName, matName)
{}
pFlow::uniquePtr<pFlow::geometry>
pFlow::geometry::create
(
systemControl& control,
const property& prop
)
{
//motionModelFile__
auto motionDictPtr = IOobject::make<dictionary>
(
objectFile
(
motionModelFile__,
control.geometry().path(),
objectFile::READ_ALWAYS,
objectFile::WRITE_NEVER
),
motionModelFile__,
true
);
word model = motionDictPtr().getObject<dictionary>().getVal<word>("motionModel");
auto geomModel = angleBracketsNames("geometry", model);
Report(1)<< "Selecting geometry model . . ."<<endReport;
if( systemControlvCtorSelector_.search(geomModel) )
{
auto objPtr = systemControlvCtorSelector_[geomModel] (control, prop);
Report(2)<<"Model "<< greenText(geomModel)<<" is created.\n"<<endReport;
return objPtr;
}
else
{
printKeys
(
fatalError << "Ctor Selector "<< yellowText(geomModel) << " dose not exist. \n"
<<"Avaiable ones are: \n\n"
,
systemControlvCtorSelector_
);
fatalExit;
}
return nullptr;
}
pFlow::uniquePtr<pFlow::geometry>
pFlow::geometry::create(
systemControl& control,
const property& prop,
const dictionary& dict,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& propName)
{
word model = dict.getVal<word>("motionModel");
auto geomModel = angleBracketsNames("geometry", model);
Report(1)<< "Selecting geometry model . . ."<<endReport;
if( dictionaryvCtorSelector_.search(geomModel) )
{
auto objPtr = dictionaryvCtorSelector_[geomModel]
(
control,
prop,
dict,
triSurface,
motionCompName,
propName
);
Report(2)<<"Model "<< greenText(geomModel)<<" is created.\n"<<endReport;
return objPtr;
}
else
{
printKeys
(
fatalError << "Ctor Selector "<< yellowText(geomModel) << " dose not exist. \n"
<<"Avaiable ones are: \n\n"
,
dictionaryvCtorSelector_
);
fatalExit;
}
return nullptr;
}

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#ifndef __geometry_H__
#define __geometry_H__
#include "virtualConstructor.H"
#include "demGeometry.H"
#include "property.H"
#include "Fields.H"
#include "Vectors.H"
#include "multiTriSurface.H"
#include "triSurfaceFields.H"
#include "dictionary.H"
namespace pFlow
{
class geometry
:
public demGeometry
{
protected:
const property& wallProperty_;
// - this object is owned by geometryRepository_
repository& geometryRepository_;
// all triangles of walls
multiTriSurface& triSurface_;
//
wordField& motionComponentName_;
//
wordField& materialName_;
int8TriSurfaceField_D& propertyId_;
realx3TriSurfaceField_D& contactForceWall_;
realx3TriSurfaceField_D& stressWall_;
bool findPropertyId();
void zeroForce()
{
contactForceWall_.fill(zero3);
}
public:
// - type info
TypeName("geometry");
//// - Constructors
// - empty
geometry(systemControl& control, const property& prop);
// - from components
geometry(systemControl& control,
const property& prop,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& propName
);
geometry(systemControl& control,
const property& prop,
const dictionary& dict,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& propName);
virtual ~geometry() = default;
create_vCtor
(
geometry,
systemControl,
(
systemControl& control,
const property& prop
),
(control, prop)
);
create_vCtor
(
geometry,
dictionary,
(systemControl& control,
const property& prop,
const dictionary& dict,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& propName),
(control, prop, dict, triSurface, motionCompName, propName)
);
////- Methods
inline
auto size()const
{
return triSurface_.size();
}
inline
auto numPoints()const
{
return triSurface_.numPoints();
}
inline
auto numTriangles()const
{
return size();
}
inline
const auto& points()const
{
return triSurface_.points();
}
inline
const auto& vertices()const
{
return triSurface_.vertices();
}
inline auto getTriangleAccessor()const
{
return triSurface_.getTriangleAccessor();
}
inline auto& surface()
{
return triSurface_;
}
inline const auto& surface()const
{
return triSurface_;
}
inline
realx3TriSurfaceField_D& contactForceWall()
{
return contactForceWall_;
}
inline
const realx3TriSurfaceField_D& contactForceWall() const
{
return contactForceWall_;
}
inline const auto& wallProperty()const
{
return wallProperty_;
}
// owner repository
inline
const repository& owner()const
{
return geometryRepository_;
}
inline
repository& owner()
{
return geometryRepository_;
}
inline auto path()
{
return owner().path();
}
virtual
word motionModelTypeName()const = 0;
virtual
const int8Vector_HD& triMotionIndex() const =0;
virtual
const int8Vector_HD& pointMotionIndex()const = 0;
const int8TriSurfaceField_D& propertyId() const
{
return propertyId_;
}
bool beforeIteration() override {
this->zeroForce();
return true;
}
bool afterIteration() override {
auto Force = contactForceWall_.deviceVectorAll();
auto area = triSurface_.area().deviceVectorAll();
auto stress = stressWall_.deviceVectorAll();
auto numTri =triSurface_.size();
Kokkos::parallel_for(
"geometry::calculateStress",
numTri,
LAMBDA_HD(int32 i){
stress[i] = Force[i]/area[i];
});
Kokkos::fence();
return true;
}
bool write()const
{
return owner().write();
}
// static
static
uniquePtr<geometry> create(systemControl& control, const property& prop);
static
uniquePtr<geometry> create(
systemControl& control,
const property& prop,
const dictionary& dict,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& propName);
};
}
#endif

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
template<typename MotionModel>
bool pFlow::geometryMotion<MotionModel>::moveGeometry()
{
real dt = this->dt();
auto pointMIndex= pointMotionIndex_.deviceVector();
auto mModel = motionModel_.getModel();
realx3* points = triSurface_.pointsData_D();
auto numPoints = triSurface_.numPoints();
Kokkos::parallel_for(
"geometryMotion<MotionModel>::movePoints",
numPoints,
LAMBDA_HD(int32 i){
auto newPos = mModel.transferPoint(pointMIndex[i], points[i], dt);
points[i] = newPos;
});
Kokkos::fence();
// end of calculations
moveGeomTimer_.end();
return true;
}
template<typename MotionModel>
bool pFlow::geometryMotion<MotionModel>::findMotionIndex()
{
motionIndex_.clear();
triMotionIndex_.reserve( this->surface().capacity() );
triMotionIndex_.clear();
forAll( surfI, motionComponentName_)
{
auto mName = motionComponentName_[surfI];
auto mInd = motionModel_.nameToIndex(mName);
motionIndex_.push_back(mInd);
// fill motionIndex for triangles of the surface
int32 surfSize = this->surface().surfNumTriangles(surfI);
for(int32 i=0; i<surfSize; i++)
{
triMotionIndex_.push_back(mInd);
}
}
motionIndex_.syncViews();
triMotionIndex_.syncViews();
pointMotionIndex_.reserve(triSurface_.numPoints());
pointMotionIndex_.clear();
forAll(surfI, motionIndex_)
{
auto nP = triSurface_.surfNumPoints(surfI);
for(int32 i=0; i<nP; i++)
{
pointMotionIndex_.push_back(motionIndex_[surfI]);
}
}
pointMotionIndex_.syncViews();
return true;
}
template<typename MotionModel>
pFlow::geometryMotion<MotionModel>::geometryMotion
(
systemControl& control,
const property& prop
)
:
geometry(control, prop),
motionModel_(
this->owner().template emplaceObject<MotionModel>(
objectFile(
motionModelFile__,
"",
objectFile::READ_ALWAYS,
objectFile::WRITE_ALWAYS
)
)
),
moveGeomTimer_("move geometry", &this->timers())
{
findMotionIndex();
}
template<typename MotionModel>
pFlow::geometryMotion<MotionModel>::geometryMotion
(
systemControl& control,
const property& prop,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& propName,
const MotionModel& motionModel
)
:
geometry(
control,
prop,
triSurface,
motionCompName,
propName
),
motionModel_(
this->owner().template emplaceObject<MotionModel>(
objectFile(
motionModelFile__,
"",
objectFile::READ_NEVER,
objectFile::WRITE_ALWAYS
),
motionModel
)
),
moveGeomTimer_("move geometry", &this->timers())
{
findMotionIndex();
}
template<typename MotionModel>
pFlow::geometryMotion<MotionModel>::geometryMotion
(
systemControl& control,
const property& prop,
const dictionary& dict,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& propName
)
:
geometry(
control,
prop,
dict,
triSurface,
motionCompName,
propName
),
motionModel_(
this->owner().template emplaceObject<MotionModel>(
objectFile(
motionModelFile__,
"",
objectFile::READ_NEVER,
objectFile::WRITE_ALWAYS
),
dict
)
),
moveGeomTimer_("move geometry", &this->timers())
{
findMotionIndex();
}
template<typename MotionModel>
bool pFlow::geometryMotion<MotionModel>::iterate()
{
if( motionModel_.isMoving() )
{
moveGeomTimer_.start();
moveGeometry();
moveGeomTimer_.end();
}
return true;
}

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#ifndef __geometryMotion_H__
#define __geometryMotion_H__
#include "geometry.H"
#include "VectorDuals.H"
namespace pFlow
{
template<typename MotionModelType>
class geometryMotion
:
public geometry
{
public:
using MotionModel = MotionModelType;
protected:
MotionModel& motionModel_;
// motion indext mapped on each surface
int32Vector_HD motionIndex_;
// motion index mapped on each triangle
int8Vector_HD triMotionIndex_;
/// motion index mapped on each point
int8Vector_HD pointMotionIndex_;
// timer for moveGeometry
Timer moveGeomTimer_;
bool findMotionIndex();
public:
// type info
TypeNameTemplate("geometry", MotionModel);
//// - Constructors
geometryMotion(systemControl& control, const property& prop);
// construct from components
geometryMotion(
systemControl& control,
const property& prop,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& propName,
const MotionModel& motionModel);
// - construct from components and dictionary that contains
// motionModel
geometryMotion(systemControl& control,
const property& prop,
const dictionary& dict,
const multiTriSurface& triSurface,
const wordVector& motionCompName,
const wordVector& propName);
add_vCtor
(
geometry,
geometryMotion,
systemControl
);
add_vCtor
(
geometry,
geometryMotion,
dictionary
);
//// - Methods
auto getModel()const
{
return motionModel_.getModel();
}
word motionModelTypeName()const override
{
return motionModel_.typeName();
}
const int8Vector_HD& triMotionIndex()const override
{
return triMotionIndex_;
}
const int8Vector_HD& pointMotionIndex()const override
{
return pointMotionIndex_;
}
// - iterate
bool beforeIteration() override {
geometry::beforeIteration();
return true;
}
bool iterate() override ;
bool afterIteration() override {
geometry::afterIteration();
return true;
}
bool moveGeometry();
};
}
#include "geometryMotion.C"
#ifndef BUILD_SHARED_LIBS
#include "geometryMotionsInstantiate.C"
#endif
#endif //__geometryMotion_H__

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#include "geometryMotions.H"
#ifdef BUILD_SHARED_LIBS
#include "geometryMotionsInstantiate.C"
#endif

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#ifndef __geometryMotions_H__
#define __geometryMotions_H__
#include "geometryMotion.H"
#include "fixedWall.H"
#include "rotatingAxisMotion.H"
namespace pFlow
{
typedef geometryMotion<rotatingAxisMotion> rotationAxisMotionGeometry;
typedef geometryMotion<fixedWall> fixedGeometry;
}
#endif

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/*------------------------------- phasicFlow ---------------------------------
O C enter of
O O E ngineering and
O O M ultiscale modeling of
OOOOOOO F luid flow
------------------------------------------------------------------------------
Copyright (C): www.cemf.ir
email: hamid.r.norouzi AT gmail.com
------------------------------------------------------------------------------
Licence:
This file is part of phasicFlow code. It is a free software for simulating
granular and multiphase flows. You can redistribute it and/or modify it under
the terms of GNU General Public License v3 or any other later versions.
phasicFlow is distributed to help others in their research in the field of
granular and multiphase flows, but WITHOUT ANY WARRANTY; without even the
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#include "fixedWall.H"
#include "rotatingAxisMotion.H"
template class pFlow::geometryMotion<pFlow::fixedWall>;
template class pFlow::geometryMotion<pFlow::rotatingAxisMotion>;