This is the first merge from main into MPI branch

Merge branch 'main' into local-MPI
This commit is contained in:
Hamidreza
2025-05-03 16:40:46 +03:30
578 changed files with 118959 additions and 28494 deletions

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@ -37,7 +37,8 @@ bool intAllActive(
real dt,
realx3Field_D& y,
realx3PointField_D& dy,
realx3PointField_D& dy1)
realx3PointField_D& dy1,
real damping = 1.0)
{
auto d_dy = dy.deviceView();
@ -49,7 +50,7 @@ bool intAllActive(
"AdamsBashforth2::correct",
rpIntegration (activeRng.start(), activeRng.end()),
LAMBDA_HD(uint32 i){
d_y[i] += dt*(static_cast<real>(1.5) * d_dy[i] - static_cast<real>(0.5) * d_dy1[i]);
d_y[i] += damping * dt*(static_cast<real>(1.5) * d_dy[i] - static_cast<real>(0.5) * d_dy1[i]);
d_dy1[i] = d_dy[i];
});
Kokkos::fence();
@ -62,7 +63,8 @@ bool intScattered
real dt,
realx3Field_D& y,
realx3PointField_D& dy,
realx3PointField_D& dy1
realx3PointField_D& dy1,
real damping = 1.0
)
{
@ -78,7 +80,7 @@ bool intScattered
LAMBDA_HD(uint32 i){
if( activeP(i))
{
d_y[i] += dt*(static_cast<real>(1.5) * d_dy[i] - static_cast<real>(0.5) * d_dy1[i]);
d_y[i] += damping * dt*(static_cast<real>(1.5) * d_dy[i] - static_cast<real>(0.5) * d_dy1[i]);
d_dy1[i] = d_dy[i];
}
});
@ -90,17 +92,16 @@ bool intScattered
}
pFlow::AdamsBashforth2::AdamsBashforth2
(
const word& baseName,
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField
const realx3Field_D& initialValField,
bool keepHistory
)
:
integration(baseName, pStruct, method, initialValField),
integration(baseName, pStruct, method, initialValField, keepHistory),
realx3PointField_D
(
objectFile
@ -108,20 +109,27 @@ pFlow::AdamsBashforth2::AdamsBashforth2
groupNames(baseName,"dy1"),
pStruct.time().integrationFolder(),
objectFile::READ_IF_PRESENT,
objectFile::WRITE_ALWAYS
keepHistory?objectFile::WRITE_ALWAYS:objectFile::WRITE_NEVER
),
pStruct,
zero3,
zero3
)
{}
),
initialValField_(initialValField),
boundaryList_(pStruct, method, *this)
{
realx3PointField_D::addEvent(message::ITEMS_INSERT);
}
bool pFlow::AdamsBashforth2::predict
(
real UNUSED(dt),
realx3PointField_D& UNUSED(y),
realx3PointField_D& UNUSED(dy)
)
void pFlow::AdamsBashforth2::updateBoundariesSlaveToMasterIfRequested()
{
realx3PointField_D::updateBoundariesSlaveToMasterIfRequested();
}
bool pFlow::AdamsBashforth2::predict(
real UNUSED(dt),
realx3PointField_D &UNUSED(y),
realx3PointField_D &UNUSED(dy))
{
return true;
}
@ -140,31 +148,63 @@ bool pFlow::AdamsBashforth2::correct
(
real dt,
realx3PointField_D& y,
realx3PointField_D& dy
realx3PointField_D& dy,
real damping
)
{
return correct(dt, y.field(), dy);
}
bool pFlow::AdamsBashforth2::correct(real dt, realx3Field_D &y, realx3PointField_D &dy)
{
auto& dy1l = dy1();
bool success = false;
if(dy1l.isAllActive())
{
return intAllActive(dt, y, dy, dy1l);
success = intAllActive(dt, y.field(), dy, dy1(), damping);
}
else
{
return intScattered(dt, y, dy, dy1l);
success = intScattered(dt, y.field(), dy, dy1(), damping);
}
return false;
success = success && boundaryList_.correct(dt, y, dy);
return success;
}
bool pFlow::AdamsBashforth2::setInitialVals(
const int32IndexContainer& newIndices,
const realx3Vector& y)
bool pFlow::AdamsBashforth2::correctPStruct(
real dt,
pointStructure &pStruct,
realx3PointField_D &vel)
{
return true;
auto& dy1l = dy1();
bool success = false;
if(dy1l.isAllActive())
{
success = intAllActive(dt, pStruct.pointPosition(), vel, dy1());
}
else
{
success = intScattered(dt, pStruct.pointPosition(), vel, dy1());
}
success = success && boundaryList_.correctPStruct(dt, pStruct, vel);
return success;
}
/*bool pFlow::AdamsBashforth2::hearChanges
(
const timeInfo &ti,
const message &msg,
const anyList &varList
)
{
if(msg.equivalentTo(message::ITEMS_INSERT))
{
return insertValues(varList, initialValField_.deviceViewAll(), dy1());
}
else
{
return realx3PointField_D::hearChanges(ti, msg, varList);
}
}*/

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@ -17,13 +17,13 @@ Licence:
implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-----------------------------------------------------------------------------*/
#ifndef __AdamsBashforth2_hpp__
#define __AdamsBashforth2_hpp__
#include "integration.hpp"
#include "pointFields.hpp"
#include "boundaryIntegrationList.hpp"
namespace pFlow
{
@ -41,10 +41,33 @@ class AdamsBashforth2
{
private:
const realx3Field_D& initialValField_;
boundaryIntegrationList boundaryList_;
friend class processorAB2BoundaryIntegration;
protected:
const auto& dy1()const
{
return static_cast<const realx3PointField_D&>(*this);
}
auto& dy1()
{
return static_cast<realx3PointField_D&>(*this);
}
auto& initialValField()
{
return initialValField_;
}
boundaryIntegrationList& boundaryList()
{
return boundaryList_;
}
public:
@ -58,10 +81,11 @@ public:
const word& baseName,
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField);
const realx3Field_D& initialValField,
bool keepHistory);
/// Destructor
~AdamsBashforth2()final = default;
~AdamsBashforth2()override = default;
/// Add this to the virtual constructor table
add_vCtor(
@ -71,6 +95,9 @@ public:
// - Methods
void updateBoundariesSlaveToMasterIfRequested()override;
/// return integration method
word method()const override
{
@ -90,31 +117,21 @@ public:
bool correct(
real dt,
realx3PointField_D& y,
realx3PointField_D& dy) final;
realx3PointField_D& dy,
real damping = 1.0) override;
bool correct(
bool correctPStruct(
real dt,
realx3Field_D& y,
realx3PointField_D& dy) final;
pointStructure& pStruct,
realx3PointField_D& vel) override;
/*bool hearChanges
(
real t,
real dt,
uint32 iter,
const timeInfo& ti,
const message& msg,
const anyList& varList
) override;*/
bool setInitialVals(
const int32IndexContainer& newIndices,
const realx3Vector& y) final;
bool needSetInitialVals()const final
{
return false;
}
};

View File

@ -20,90 +20,185 @@ Licence:
#include "AdamsBashforth3.hpp"
namespace pFlow
{
/// Range policy for integration kernel (alias)
using rpIntegration = Kokkos::RangePolicy<
DefaultExecutionSpace,
Kokkos::Schedule<Kokkos::Static>,
Kokkos::IndexType<uint32>
>;
bool intAllActive(
real dt,
realx3Field_D& y,
realx3PointField_D& dy,
realx3PointField_D& dy1,
realx3PointField_D& dy2,
real damping = 1.0)
{
auto d_dy = dy.deviceView();
auto d_y = y.deviceView();
auto d_dy1= dy1.deviceView();
auto d_dy2= dy2.deviceView();
auto activeRng = dy1.activeRange();
Kokkos::parallel_for(
"AdamsBashforth3::correct",
rpIntegration (activeRng.start(), activeRng.end()),
LAMBDA_HD(uint32 i){
d_y[i] += damping* dt*( static_cast<real>(23.0 / 12.0) * d_dy[i]
- static_cast<real>(16.0 / 12.0) * d_dy1[i]
+ static_cast<real>(5.0 / 12.0) * d_dy2[i]) ;
d_dy2[i] = d_dy1[i];
d_dy1[i] = d_dy[i];
});
Kokkos::fence();
return true;
}
bool intScattered
(
real dt,
realx3Field_D& y,
realx3PointField_D& dy,
realx3PointField_D& dy1,
realx3PointField_D& dy2,
real damping = 1.0
)
{
auto d_dy = dy.deviceView();
auto d_y = y.deviceView();
auto d_dy1 = dy1.deviceView();
auto d_dy2 = dy2.deviceView();
auto activeRng = dy1.activeRange();
const auto& activeP = dy1.activePointsMaskDevice();
Kokkos::parallel_for(
"AdamsBashforth3::correct",
rpIntegration (activeRng.start(), activeRng.end()),
LAMBDA_HD(uint32 i){
if( activeP(i))
{
d_y[i] += damping * dt*( static_cast<real>(23.0 / 12.0) * d_dy[i]
- static_cast<real>(16.0 / 12.0) * d_dy1[i]
+ static_cast<real>(5.0 / 12.0) * d_dy2[i]);
d_dy2[i] = d_dy1[i];
d_dy1[i] = d_dy[i];
}
});
Kokkos::fence();
return true;
}
}
//const real AB3_coef[] = { 23.0 / 12.0, 16.0 / 12.0, 5.0 / 12.0 };
pFlow::AdamsBashforth3::AdamsBashforth3
(
const word& baseName,
repository& owner,
const pointStructure& pStruct,
const word& method
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField,
bool keepHistory
)
:
integration(baseName, owner, pStruct, method),
history_(
owner.emplaceObject<pointField<VectorSingle,AB3History>>(
objectFile(
groupNames(baseName,"AB3History"),
"",
objectFile::READ_IF_PRESENT,
objectFile::WRITE_ALWAYS),
pStruct,
AB3History({zero3,zero3})))
AdamsBashforth2(baseName, pStruct, method, initialValField, keepHistory),
dy2_
(
objectFile
(
groupNames(baseName,"dy2"),
pStruct.time().integrationFolder(),
objectFile::READ_IF_PRESENT,
keepHistory ? objectFile::WRITE_ALWAYS : objectFile::WRITE_NEVER
),
pStruct,
zero3,
zero3
)
{
}
bool pFlow::AdamsBashforth3::predict
(
real UNUSED(dt),
realx3Vector_D& UNUSED(y),
realx3Vector_D& UNUSED(dy)
)
void pFlow::AdamsBashforth3::updateBoundariesSlaveToMasterIfRequested()
{
return true;
AdamsBashforth2::updateBoundariesSlaveToMasterIfRequested();
dy2_.updateBoundariesSlaveToMasterIfRequested();
}
bool pFlow::AdamsBashforth3::correct
(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy
real dt,
realx3PointField_D& y,
realx3PointField_D& dy,
real damping
)
{
if(this->pStruct().allActive())
bool success = false;
if(y.isAllActive())
{
return intAll(dt, y, dy, this->pStruct().activeRange());
success = intAllActive(dt, y.field(), dy, dy1(), dy2(), damping);
}
else
{
return intRange(dt, y, dy, this->pStruct().activePointsMaskD());
success = intScattered(dt, y.field(), dy, dy1(), dy2(), damping);
}
return true;
success = success && boundaryList().correct(dt, y, dy);
return success;
}
bool pFlow::AdamsBashforth3::setInitialVals(
const int32IndexContainer& newIndices,
const realx3Vector& y)
{
return true;
}
bool pFlow::AdamsBashforth3::intAll(
bool pFlow::AdamsBashforth3::correctPStruct(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
range activeRng)
pointStructure &pStruct,
realx3PointField_D &vel)
{
auto d_dy = dy.deviceViewAll();
auto d_y = y.deviceViewAll();
auto d_history = history_.deviceViewAll();
bool success = false;
if(dy2().isAllActive())
{
success = intAllActive(dt, pStruct.pointPosition(), vel, dy1(), dy2());
}
else
{
success = intScattered(dt, pStruct.pointPosition(), vel, dy1(), dy2());
}
Kokkos::parallel_for(
"AdamsBashforth3::correct",
rpIntegration (activeRng.first, activeRng.second),
LAMBDA_HD(int32 i){
auto ldy = d_dy[i];
d_y[i] += dt*( static_cast<real>(23.0 / 12.0) * ldy
- static_cast<real>(16.0 / 12.0) * d_history[i].dy1_
+ static_cast<real>(5.0 / 12.0) * d_history[i].dy2_);
d_history[i] = {ldy ,d_history[i].dy1_};
});
Kokkos::fence();
success = success && boundaryList().correctPStruct(dt, pStruct, vel);
return true;
}
return success;
}
/*bool pFlow::AdamsBashforth3::hearChanges
(
const timeInfo &ti,
const message &msg,
const anyList &varList
)
{
if(msg.equivalentTo(message::ITEMS_INSERT))
{
return insertValues(varList, initialValField().deviceViewAll(), dy1()) &&
insertValues(varList, initialValField().deviceViewAll(), dy2());
}
else
{
return realx3PointField_D::hearChanges(ti, msg, varList);
}
}*/

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@ -22,48 +22,14 @@ Licence:
#define __AdamsBashforth3_hpp__
#include "integration.hpp"
#include "AdamsBashforth2.hpp"
#include "pointFields.hpp"
#include "boundaryIntegrationList.hpp"
namespace pFlow
{
struct AB3History
{
TypeInfoNV("AB3History");
realx3 dy1_={0,0,0};
realx3 dy2_={0,0,0};
};
INLINE_FUNCTION
iIstream& operator>>(iIstream& str, AB3History& ab3)
{
str.readBegin("AB3History");
str >> ab3.dy1_;
str >> ab3.dy2_;
str.readEnd("AB3History");
str.check(FUNCTION_NAME);
return str;
}
INLINE_FUNCTION
iOstream& operator<<(iOstream& str, const AB3History& ab3)
{
str << token::BEGIN_LIST << ab3.dy1_
<< token::SPACE << ab3.dy2_
<< token::END_LIST;
str.check(FUNCTION_NAME);
return str;
}
/**
* Third order Adams-Bashforth integration method for solving ODE
@ -72,19 +38,26 @@ iOstream& operator<<(iOstream& str, const AB3History& ab3)
*/
class AdamsBashforth3
:
public integration
public AdamsBashforth2
{
protected:
private:
/// Integration history
pointField<VectorSingle,AB3History>& history_;
friend class processorAB3BoundaryIntegration;
/// Range policy for integration kernel
using rpIntegration = Kokkos::RangePolicy<
DefaultExecutionSpace,
Kokkos::Schedule<Kokkos::Static>,
Kokkos::IndexType<int32>
>;
realx3PointField_D dy2_;
protected:
const auto& dy2()const
{
return dy2_;
}
auto& dy2()
{
return dy2_;
}
public:
@ -96,17 +69,14 @@ public:
/// Construct from components
AdamsBashforth3(
const word& baseName,
repository& owner,
const pointStructure& pStruct,
const word& method);
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField,
bool keepHistory);
uniquePtr<integration> clone()const override
{
return makeUnique<AdamsBashforth3>(*this);
}
/// Destructor
virtual ~AdamsBashforth3()=default;
~AdamsBashforth3() override =default;
/// Add this to the virtual constructor table
add_vCtor(
@ -117,43 +87,39 @@ public:
// - Methods
bool predict(
real UNUSED(dt),
realx3Vector_D & UNUSED(y),
realx3Vector_D& UNUSED(dy)) override;
void updateBoundariesSlaveToMasterIfRequested()override;
bool correct(real dt,
realx3Vector_D & y,
realx3Vector_D& dy) override;
bool setInitialVals(
const int32IndexContainer& newIndices,
const realx3Vector& y) override;
bool needSetInitialVals()const override
/// return integration method
word method()const override
{
return false;
return "AdamsBashforth3";
}
/// Integrate on all points in the active range
bool intAll(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
range activeRng);
/// Integrate on active points in the active range
template<typename activeFunctor>
bool intRange(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
activeFunctor activeP );
bool correct(
real dt,
realx3PointField_D& y,
realx3PointField_D& dy,
real damping = 1.0) override;
bool correctPStruct(
real dt,
pointStructure& pStruct,
realx3PointField_D& vel) override;
/*bool hearChanges
(
const timeInfo& ti,
const message& msg,
const anyList& varList
) override;*/
};
template<typename activeFunctor>
/*template<typename activeFunctor>
bool pFlow::AdamsBashforth3::intRange(
real dt,
realx3Vector_D& y,
@ -181,7 +147,7 @@ bool pFlow::AdamsBashforth3::intRange(
Kokkos::fence();
return true;
}
}*/
} // pFlow

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@ -20,96 +20,187 @@ Licence:
#include "AdamsBashforth4.hpp"
pFlow::AdamsBashforth4::AdamsBashforth4
(
const word& baseName,
repository& owner,
const pointStructure& pStruct,
const word& method
)
:
integration(baseName, owner, pStruct, method),
history_(
owner.emplaceObject<pointField<VectorSingle,AB4History>>(
objectFile(
groupNames(baseName,"AB4History"),
"",
objectFile::READ_IF_PRESENT,
objectFile::WRITE_ALWAYS),
pStruct,
AB4History({zero3,zero3, zero3})))
namespace pFlow
{
}
/// Range policy for integration kernel (alias)
using rpIntegration = Kokkos::RangePolicy<
DefaultExecutionSpace,
Kokkos::Schedule<Kokkos::Static>,
Kokkos::IndexType<uint32>
>;
bool pFlow::AdamsBashforth4::predict
(
real UNUSED(dt),
realx3Vector_D& UNUSED(y),
realx3Vector_D& UNUSED(dy)
)
{
return true;
}
bool pFlow::AdamsBashforth4::correct
(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy
)
{
if(this->pStruct().allActive())
{
return intAll(dt, y, dy, this->pStruct().activeRange());
}
else
{
return intRange(dt, y, dy, this->pStruct().activePointsMaskD());
}
return true;
}
bool pFlow::AdamsBashforth4::setInitialVals(
const int32IndexContainer& newIndices,
const realx3Vector& y)
{
return true;
}
bool pFlow::AdamsBashforth4::intAll(
bool intAllActive(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
range activeRng)
realx3Field_D& y,
realx3PointField_D& dy,
realx3PointField_D& dy1,
realx3PointField_D& dy2,
realx3PointField_D& dy3,
real damping = 1.0)
{
auto d_dy = dy.deviceViewAll();
auto d_y = y.deviceViewAll();
auto d_history = history_.deviceViewAll();
auto d_dy = dy.deviceView();
auto d_y = y.deviceView();
auto d_dy1= dy1.deviceView();
auto d_dy2= dy2.deviceView();
auto d_dy3= dy3.deviceView();
auto activeRng = dy1.activeRange();
Kokkos::parallel_for(
"AdamsBashforth4::correct",
rpIntegration (activeRng.first, activeRng.second),
LAMBDA_HD(int32 i){
d_y[i] += dt*(
static_cast<real>(55.0 / 24.0) * d_dy[i]
- static_cast<real>(59.0 / 24.0) * d_history[i].dy1_
+ static_cast<real>(37.0 / 24.0) * d_history[i].dy2_
- static_cast<real>( 9.0 / 24.0) * d_history[i].dy3_
);
d_history[i].dy3_ = d_history[i].dy2_;
d_history[i].dy2_ = d_history[i].dy1_;
d_history[i].dy1_ = d_dy[i];
rpIntegration (activeRng.start(), activeRng.end()),
LAMBDA_HD(uint32 i){
d_y[i] += damping * dt*(
static_cast<real>(55.0 / 24.0) * d_dy[i]
- static_cast<real>(59.0 / 24.0) * d_dy1[i]
+ static_cast<real>(37.0 / 24.0) * d_dy2[i]
- static_cast<real>( 9.0 / 24.0) * d_dy3[i]);
d_dy3[i] = d_dy2[i];
d_dy2[i] = d_dy1[i];
d_dy1[i] = d_dy[i];
});
Kokkos::fence();
return true;
}
}
bool intScattered
(
real dt,
realx3Field_D& y,
realx3PointField_D& dy,
realx3PointField_D& dy1,
realx3PointField_D& dy2,
realx3PointField_D& dy3,
real damping = 1.0
)
{
auto d_dy = dy.deviceView();
auto d_y = y.deviceView();
auto d_dy1 = dy1.deviceView();
auto d_dy2 = dy2.deviceView();
auto d_dy3 = dy3.deviceView();
auto activeRng = dy1.activeRange();
const auto& activeP = dy1.activePointsMaskDevice();
Kokkos::parallel_for(
"AdamsBashforth4::correct",
rpIntegration (activeRng.start(), activeRng.end()),
LAMBDA_HD(uint32 i){
if( activeP(i))
{
d_y[i] += damping* dt*(
static_cast<real>(55.0 / 24.0) * d_dy[i]
- static_cast<real>(59.0 / 24.0) * d_dy1[i]
+ static_cast<real>(37.0 / 24.0) * d_dy2[i]
- static_cast<real>( 9.0 / 24.0) * d_dy3[i] );
d_dy3[i] = d_dy2[i];
d_dy2[i] = d_dy1[i];
d_dy1[i] = d_dy[i];
}
});
Kokkos::fence();
return true;
}
}
pFlow::AdamsBashforth4::AdamsBashforth4
(
const word& baseName,
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField,
bool keepHistory
)
:
AdamsBashforth3(baseName, pStruct, method, initialValField, keepHistory),
dy3_
(
objectFile
(
groupNames(baseName,"dy3"),
pStruct.time().integrationFolder(),
objectFile::READ_IF_PRESENT,
keepHistory?objectFile::WRITE_ALWAYS:objectFile::WRITE_NEVER
),
pStruct,
zero3,
zero3
)
{}
void pFlow::AdamsBashforth4::updateBoundariesSlaveToMasterIfRequested()
{
AdamsBashforth3::updateBoundariesSlaveToMasterIfRequested();
dy3_.updateBoundariesSlaveToMasterIfRequested();
}
bool pFlow::AdamsBashforth4::correct
(
real dt,
realx3PointField_D& y,
realx3PointField_D& dy,
real damping
)
{
bool success = false;
if(y.isAllActive())
{
success = intAllActive(dt, y.field(), dy, dy1(), dy2(), dy3(), damping);
}
else
{
success = intScattered(dt, y.field(), dy, dy1(), dy2(), dy3(), damping);
}
success = success && boundaryList().correct(dt, y, dy);
return success;
}
bool pFlow::AdamsBashforth4::correctPStruct(
real dt,
pointStructure &pStruct,
realx3PointField_D &vel)
{
bool success = false;
if(dy2().isAllActive())
{
success = intAllActive(dt, pStruct.pointPosition(), vel, dy1(), dy2(), dy3());
}
else
{
success = intScattered(dt, pStruct.pointPosition(), vel, dy1(), dy2(), dy3());
}
success = success && boundaryList().correctPStruct(dt, pStruct, vel);
return success;
}
/*bool pFlow::AdamsBashforth4::hearChanges
(
const timeInfo &ti,
const message &msg,
const anyList &varList
)
{
if(msg.equivalentTo(message::ITEMS_INSERT))
{
return insertValues(varList, initialValField().deviceViewAll(), dy1()) &&
insertValues(varList, initialValField().deviceViewAll(), dy2()) &&
insertValues(varList, initialValField().deviceViewAll(), dy3());
}
else
{
return realx3PointField_D::hearChanges(ti, msg, varList);
}
}*/

View File

@ -22,53 +22,14 @@ Licence:
#define __AdamsBashforth4_hpp__
#include "integration.hpp"
#include "AdamsBashforth3.hpp"
#include "pointFields.hpp"
#include "boundaryIntegrationList.hpp"
namespace pFlow
{
struct AB4History
{
TypeInfoNV("AB4History");
realx3 dy1_={0,0,0};
realx3 dy2_={0,0,0};
realx3 dy3_={0,0,0};
};
INLINE_FUNCTION
iIstream& operator>>(iIstream& str, AB4History& ab4)
{
str.readBegin("AB4History");
str >> ab4.dy1_;
str >> ab4.dy2_;
str >> ab4.dy3_;
str.readEnd("AB4History");
str.check(FUNCTION_NAME);
return str;
}
INLINE_FUNCTION
iOstream& operator<<(iOstream& str, const AB4History& ab4)
{
str << token::BEGIN_LIST << ab4.dy1_
<< token::SPACE << ab4.dy2_
<< token::SPACE << ab4.dy3_
<< token::END_LIST;
str.check(FUNCTION_NAME);
return str;
}
/**
* Fourth order Adams-Bashforth integration method for solving ODE
*
@ -76,19 +37,25 @@ iOstream& operator<<(iOstream& str, const AB4History& ab4)
*/
class AdamsBashforth4
:
public integration
public AdamsBashforth3
{
private:
friend class processorAB4BoundaryIntegration;
realx3PointField_D dy3_;
protected:
/// Integration history
pointField<VectorSingle,AB4History>& history_;
const auto& dy3()const
{
return dy3_;
}
/// Range policy for integration kernel
using rpIntegration = Kokkos::RangePolicy<
DefaultExecutionSpace,
Kokkos::Schedule<Kokkos::Static>,
Kokkos::IndexType<int32>
>;
auto& dy3()
{
return dy3_;
}
public:
@ -100,17 +67,15 @@ public:
/// Construct from components
AdamsBashforth4(
const word& baseName,
repository& owner,
const pointStructure& pStruct,
const word& method);
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField,
bool keepHistory);
uniquePtr<integration> clone()const override
{
return makeUnique<AdamsBashforth4>(*this);
}
/// Destructor
virtual ~AdamsBashforth4()=default;
~AdamsBashforth4() override =default;
/// Add a this to the virtual constructor table
add_vCtor(
@ -121,77 +86,36 @@ public:
// - Methods
bool predict(
real UNUSED(dt),
realx3Vector_D & UNUSED(y),
realx3Vector_D& UNUSED(dy)) override;
void updateBoundariesSlaveToMasterIfRequested()override;
/// return integration method
word method()const override
{
return "AdamsBashforth4";
}
bool correct(
real dt,
realx3Vector_D & y,
realx3Vector_D& dy) override;
realx3PointField_D& y,
realx3PointField_D& dy,
real damping = 1.0) override;
bool setInitialVals(
const int32IndexContainer& newIndices,
const realx3Vector& y) override;
bool needSetInitialVals()const override
{
return false;
}
/// Integrate on all points in the active range
bool intAll(
bool correctPStruct(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
range activeRng);
/// Integrate on active points in the active range
template<typename activeFunctor>
bool intRange(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
activeFunctor activeP );
pointStructure& pStruct,
realx3PointField_D& vel) override;
/*bool hearChanges
(
const timeInfo& ti,
const message& msg,
const anyList& varList
) override;*/
};
template<typename activeFunctor>
bool pFlow::AdamsBashforth4::intRange(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
activeFunctor activeP )
{
auto d_dy = dy.deviceViewAll();
auto d_y = y.deviceViewAll();
auto d_history = history_.deviceViewAll();
auto activeRng = activeP.activeRange();
Kokkos::parallel_for(
"AdamsBashforth4::correct",
rpIntegration (activeRng.first, activeRng.second),
LAMBDA_HD(int32 i){
if( activeP(i))
{
d_y[i] += dt*(
static_cast<real>(55.0 / 24.0) * d_dy[i]
- static_cast<real>(59.0 / 24.0) * d_history[i].dy1_
+ static_cast<real>(37.0 / 24.0) * d_history[i].dy2_
- static_cast<real>( 9.0 / 24.0) * d_history[i].dy3_
);
d_history[i].dy3_ = d_history[i].dy2_;
d_history[i].dy2_ = d_history[i].dy1_;
d_history[i].dy1_ = d_dy[i];
}
});
Kokkos::fence();
return true;
}
} // pFlow

View File

@ -20,93 +20,179 @@ Licence:
#include "AdamsBashforth5.hpp"
pFlow::AdamsBashforth5::AdamsBashforth5
(
const word& baseName,
repository& owner,
const pointStructure& pStruct,
const word& method
)
:
integration(baseName, owner, pStruct, method),
history_(
owner.emplaceObject<pointField<VectorSingle,AB5History>>(
objectFile(
groupNames(baseName,"AB5History"),
"",
objectFile::READ_IF_PRESENT,
objectFile::WRITE_ALWAYS),
pStruct,
AB5History({zero3,zero3, zero3})))
namespace pFlow
{
}
/// Range policy for integration kernel (alias)
using rpIntegration = Kokkos::RangePolicy<
DefaultExecutionSpace,
Kokkos::Schedule<Kokkos::Static>,
Kokkos::IndexType<uint32>
>;
bool pFlow::AdamsBashforth5::predict
(
real UNUSED(dt),
realx3Vector_D& UNUSED(y),
realx3Vector_D& UNUSED(dy)
)
{
return true;
}
bool pFlow::AdamsBashforth5::correct
(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy
)
{
if(this->pStruct().allActive())
{
return intAll(dt, y, dy, this->pStruct().activeRange());
}
else
{
return intRange(dt, y, dy, this->pStruct().activePointsMaskD());
}
return true;
}
bool pFlow::AdamsBashforth5::setInitialVals(
const int32IndexContainer& newIndices,
const realx3Vector& y)
{
return true;
}
bool pFlow::AdamsBashforth5::intAll(
bool intAllActive(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
range activeRng)
realx3Field_D& y,
realx3PointField_D& dy,
realx3PointField_D& dy1,
realx3PointField_D& dy2,
realx3PointField_D& dy3,
realx3PointField_D& dy4,
real damping = 1.0)
{
auto d_dy = dy.deviceViewAll();
auto d_y = y.deviceViewAll();
auto d_history = history_.deviceViewAll();
auto d_dy = dy.deviceView();
auto d_y = y.deviceView();
auto d_dy1= dy1.deviceView();
auto d_dy2= dy2.deviceView();
auto d_dy3= dy3.deviceView();
auto d_dy4= dy4.deviceView();
auto activeRng = dy1.activeRange();
Kokkos::parallel_for(
"AdamsBashforth5::correct",
rpIntegration (activeRng.first, activeRng.second),
LAMBDA_HD(int32 i){
d_y[i] += dt*(
rpIntegration (activeRng.start(), activeRng.end()),
LAMBDA_HD(uint32 i){
d_y[i] += damping* dt*(
static_cast<real>(1901.0 / 720.0) * d_dy[i]
- static_cast<real>(2774.0 / 720.0) * d_history[i].dy1_
+ static_cast<real>(2616.0 / 720.0) * d_history[i].dy2_
- static_cast<real>(1274.0 / 720.0) * d_history[i].dy3_
+ static_cast<real>( 251.0 / 720.0) * d_history[i].dy4_
);
d_history[i] = {d_dy[i] ,d_history[i].dy1_, d_history[i].dy2_, d_history[i].dy3_};
- static_cast<real>(2774.0 / 720.0) * d_dy1[i]
+ static_cast<real>(2616.0 / 720.0) * d_dy2[i]
- static_cast<real>(1274.0 / 720.0) * d_dy3[i]
+ static_cast<real>( 251.0 / 720.0) * d_dy4[i]);
d_dy4[i] = d_dy3[i];
d_dy3[i] = d_dy2[i];
d_dy2[i] = d_dy1[i];
d_dy1[i] = d_dy[i];
});
Kokkos::fence();
return true;
}
}
bool intScattered
(
real dt,
realx3Field_D& y,
realx3PointField_D& dy,
realx3PointField_D& dy1,
realx3PointField_D& dy2,
realx3PointField_D& dy3,
realx3PointField_D& dy4,
real damping = 1.0
)
{
auto d_dy = dy.deviceView();
auto d_y = y.deviceView();
auto d_dy1 = dy1.deviceView();
auto d_dy2 = dy2.deviceView();
auto d_dy3 = dy3.deviceView();
auto d_dy4 = dy4.deviceView();
auto activeRng = dy1.activeRange();
const auto& activeP = dy1.activePointsMaskDevice();
Kokkos::parallel_for(
"AdamsBashforth5::correct",
rpIntegration (activeRng.start(), activeRng.end()),
LAMBDA_HD(uint32 i){
if( activeP(i))
{
d_y[i] += damping* dt*(
static_cast<real>(1901.0 / 720.0) * d_dy[i]
- static_cast<real>(2774.0 / 720.0) * d_dy1[i]
+ static_cast<real>(2616.0 / 720.0) * d_dy2[i]
- static_cast<real>(1274.0 / 720.0) * d_dy3[i]
+ static_cast<real>( 251.0 / 720.0) * d_dy4[i]);
d_dy4[i] = d_dy3[i];
d_dy3[i] = d_dy2[i];
d_dy2[i] = d_dy1[i];
d_dy1[i] = d_dy[i];
}
});
Kokkos::fence();
return true;
}
}
pFlow::AdamsBashforth5::AdamsBashforth5
(
const word &baseName,
pointStructure &pStruct,
const word &method,
const realx3Field_D &initialValField,
bool keepHistory
)
:
AdamsBashforth4(baseName, pStruct, method, initialValField, keepHistory),
dy4_
(
objectFile
(
groupNames(baseName,"dy4"),
pStruct.time().integrationFolder(),
objectFile::READ_IF_PRESENT,
keepHistory?objectFile::WRITE_ALWAYS:objectFile::WRITE_NEVER
),
pStruct,
zero3,
zero3
)
{}
void pFlow::AdamsBashforth5::updateBoundariesSlaveToMasterIfRequested()
{
AdamsBashforth4::updateBoundariesSlaveToMasterIfRequested();
dy4_.updateBoundariesSlaveToMasterIfRequested();
}
bool pFlow::AdamsBashforth5::correct
(
real dt,
realx3PointField_D &y,
realx3PointField_D &dy,
real damping
)
{
bool success = false;
if(y.isAllActive())
{
success = intAllActive(dt, y.field(), dy, dy1(), dy2(), dy3(), dy4(), damping);
}
else
{
success = intScattered(dt, y.field(), dy, dy1(), dy2(), dy3(), dy4(), damping);
}
success = success && boundaryList().correct(dt, y, dy);
return success;
}
bool pFlow::AdamsBashforth5::correctPStruct
(
real dt,
pointStructure &pStruct,
realx3PointField_D &vel
)
{
bool success = false;
if(dy2().isAllActive())
{
success = intAllActive(dt, pStruct.pointPosition(), vel, dy1(), dy2(), dy3(), dy4());
}
else
{
success = intScattered(dt, pStruct.pointPosition(), vel, dy1(), dy2(), dy3(), dy4());
}
success = success && boundaryList().correctPStruct(dt, pStruct, vel);
return success;
}

View File

@ -22,54 +22,12 @@ Licence:
#define __AdamsBashforth5_hpp__
#include "integration.hpp"
#include "AdamsBashforth4.hpp"
#include "pointFields.hpp"
namespace pFlow
{
struct AB5History
{
TypeInfoNV("AB5History");
realx3 dy1_={0,0,0};
realx3 dy2_={0,0,0};
realx3 dy3_={0,0,0};
realx3 dy4_={0,0,0};
};
INLINE_FUNCTION
iIstream& operator>>(iIstream& str, AB5History& ab5)
{
str.readBegin("AB5History");
str >> ab5.dy1_;
str >> ab5.dy2_;
str >> ab5.dy3_;
str >> ab5.dy4_;
str.readEnd("AB5History");
str.check(FUNCTION_NAME);
return str;
}
INLINE_FUNCTION
iOstream& operator<<(iOstream& str, const AB5History& ab5)
{
str << token::BEGIN_LIST << ab5.dy1_
<< token::SPACE << ab5.dy2_
<< token::SPACE << ab5.dy3_
<< token::SPACE << ab5.dy4_
<< token::END_LIST;
str.check(FUNCTION_NAME);
return str;
}
/**
* Fifth order Adams-Bashforth integration method for solving ODE
@ -78,19 +36,25 @@ iOstream& operator<<(iOstream& str, const AB5History& ab5)
*/
class AdamsBashforth5
:
public integration
public AdamsBashforth4
{
private:
friend class processorAB4BoundaryIntegration;
realx3PointField_D dy4_;
protected:
/// Integration history
pointField<VectorSingle,AB5History>& history_;
const auto& dy4()const
{
return dy4_;
}
/// Range policy for integration kernel
using rpIntegration = Kokkos::RangePolicy<
DefaultExecutionSpace,
Kokkos::Schedule<Kokkos::Static>,
Kokkos::IndexType<int32>
>;
auto& dy4()
{
return dy4_;
}
public:
@ -99,20 +63,20 @@ public:
// - Constructors
/// Construct from components
AdamsBashforth5(
const word& baseName,
repository& owner,
const pointStructure& pStruct,
const word& method);
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField,
bool keepHistory);
uniquePtr<integration> clone()const override
{
return makeUnique<AdamsBashforth5>(*this);
}
/// Destructor
~AdamsBashforth5() override =default;
virtual ~AdamsBashforth5()=default;
/// Add this to the virtual constructor table
/// Add a this to the virtual constructor table
add_vCtor(
integration,
AdamsBashforth5,
@ -121,44 +85,29 @@ public:
// - Methods
bool predict(
real UNUSED(dt),
realx3Vector_D & UNUSED(y),
realx3Vector_D& UNUSED(dy)) override;
void updateBoundariesSlaveToMasterIfRequested()override;
/// return integration method
word method()const override
{
return "AdamsBashforth5";
}
bool correct(
real dt,
realx3Vector_D & y,
realx3Vector_D& dy) override;
realx3PointField_D& y,
realx3PointField_D& dy,
real damping = 1.0) override;
bool setInitialVals(
const int32IndexContainer& newIndices,
const realx3Vector& y) override;
bool needSetInitialVals()const override
{
return false;
}
/// Integrate on all points in the active range
bool intAll(
bool correctPStruct(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
range activeRng);
/// Integrate on active points in the active range
template<typename activeFunctor>
bool intRange(
real dt,
realx3Vector_D& y,
realx3Vector_D& dy,
activeFunctor activeP );
pointStructure& pStruct,
realx3PointField_D& vel) override;
};
template<typename activeFunctor>
/*template<typename activeFunctor>
bool pFlow::AdamsBashforth5::intRange(
real dt,
realx3Vector_D& y,
@ -190,7 +139,7 @@ bool pFlow::AdamsBashforth5::intRange(
Kokkos::fence();
return true;
}
}*/
} // pFlow

View File

@ -1,15 +1,23 @@
list(APPEND SourceFiles
integration/integration.cpp
integration/integration.cpp
boundaries/boundaryIntegration.cpp
boundaries/boundaryIntegrationList.cpp
AdamsBashforth2/AdamsBashforth2.cpp
#AdamsBashforth5/AdamsBashforth5.cpp
#AdamsBashforth4/AdamsBashforth4.cpp
#AdamsBashforth3/AdamsBashforth3.cpp
AdamsBashforth3/AdamsBashforth3.cpp
AdamsBashforth4/AdamsBashforth4.cpp
AdamsBashforth5/AdamsBashforth5.cpp
#AdamsMoulton3/AdamsMoulton3.cpp
#AdamsMoulton4/AdamsMoulton4.cpp
#AdamsMoulton5/AdamsMoulton5.cpp
)
if(pFlow_Build_MPI)
list(APPEND SourceFiles
AdamsBashforth2/processorAB2BoundaryIntegration.cpp)
endif()
set(link_libs Kokkos::kokkos phasicFlow)
pFlow_add_library_install(Integration SourceFiles link_libs)

View File

@ -51,9 +51,7 @@ public:
);
bool hearChanges(
real t,
real dt,
uint32 iter,
const timeInfo& ti,
const message &msg,
const anyList &varList) override
{
@ -77,6 +75,11 @@ public:
return true;
}
bool isActive()const override
{
return false;
}
static
uniquePtr<boundaryIntegration> create(
const boundaryBase& boundary,

View File

@ -7,11 +7,11 @@ pFlow::boundaryIntegrationList::boundaryIntegrationList(
integration &intgrtn
)
:
ListPtr<boundaryIntegration>(6),
boundaryListPtr<boundaryIntegration>(),
boundaries_(pStruct.boundaries())
{
for(uint32 i=0; i<6; i++)
ForAllBoundariesPtr(i, this)
{
this->set(
i,
@ -19,23 +19,40 @@ pFlow::boundaryIntegrationList::boundaryIntegrationList(
boundaries_[i],
pStruct,
method,
intgrtn
)
);
intgrtn
)
);
}
}
bool pFlow::boundaryIntegrationList::correct(real dt, realx3PointField_D &y, realx3PointField_D &dy)
{
for(auto& bndry:*this)
ForAllActiveBoundariesPtr(i,this)
{
if(!bndry->correct(dt, y, dy))
if(!boundaryPtr(i)->correct(dt, y, dy))
{
fatalErrorInFunction;
fatalErrorInFunction<<"Error in correcting boundary "<<
boundaryPtr(i)->boundaryName()<<endl;
return false;
}
}
}
return true;
}
bool pFlow::boundaryIntegrationList::correctPStruct(
real dt,
pointStructure &pStruct,
const realx3PointField_D &vel)
{
ForAllActiveBoundariesPtr(i,this)
{
if(!boundaryPtr(i)->correctPStruct(dt, vel))
{
fatalErrorInFunction<<"Error in correcting boundary "<<
boundaryPtr(i)->boundaryName()<<" in pointStructure."<<endl;
return false;
}
}
return true;
}

View File

@ -4,7 +4,7 @@
#include "boundaryList.hpp"
#include "ListPtr.hpp"
#include "boundaryListPtr.hpp"
#include "boundaryIntegration.hpp"
@ -15,7 +15,7 @@ class integration;
class boundaryIntegrationList
:
public ListPtr<boundaryIntegration>
public boundaryListPtr<boundaryIntegration>
{
private:
@ -35,6 +35,12 @@ public:
real dt,
realx3PointField_D& y,
realx3PointField_D& dy);
bool correctPStruct(
real dt,
pointStructure& pStruct,
const realx3PointField_D& vel);
};

View File

@ -22,17 +22,41 @@ Licence:
#include "pointStructure.hpp"
#include "repository.hpp"
pFlow::integration::integration
bool pFlow::integration::insertValues
(
const word& baseName,
pointStructure& pStruct,
const word&,
const realx3Field_D&
const anyList& varList,
const deviceViewType1D<realx3>& srcVals,
realx3PointField_D& dstFeild
)
:
owner_(*pStruct.owner()),
pStruct_(pStruct),
baseName_(baseName)
{
const word eventName = message::eventName(message::ITEMS_INSERT);
if(!varList.checkObjectType<uint32IndexContainer>(eventName))
{
fatalErrorInFunction<<"Insertion failed in integration for "<< baseName_<<
", variable "<< eventName <<
" does not exist or the type is incorrect"<<endl;
return false;
}
const auto& indices = varList.getObject<uint32IndexContainer>(
eventName);
dstFeild.field().insertSetElement(indices, srcVals);
return true;
}
pFlow::integration::integration(
const word &baseName,
pointStructure &pStruct,
const word &,
const realx3Field_D &,
bool keepHistory)
: owner_(*pStruct.owner()),
pStruct_(pStruct),
baseName_(baseName),
keepHistory_(keepHistory)
{}
@ -42,12 +66,13 @@ pFlow::uniquePtr<pFlow::integration>
const word& baseName,
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField
const realx3Field_D& initialValField,
bool keepHistory
)
{
if( wordvCtorSelector_.search(method) )
{
return wordvCtorSelector_[method] (baseName, pStruct, method, initialValField);
return wordvCtorSelector_[method] (baseName, pStruct, method, initialValField, keepHistory);
}
else
{

View File

@ -24,6 +24,7 @@ Licence:
#include "virtualConstructor.hpp"
#include "pointFields.hpp"
#include "Logical.hpp"
namespace pFlow
@ -63,6 +64,15 @@ private:
/// The base name for integration
const word baseName_;
bool keepHistory_;
protected:
bool insertValues(
const anyList& varList,
const deviceViewType1D<realx3>& srcVals,
realx3PointField_D& dstFeild);
public:
/// Type info
@ -76,7 +86,8 @@ public:
const word& baseName,
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField);
const realx3Field_D& initialValField,
bool keepHistory);
/// Copy constructor
integration(const integration&) = default;
@ -102,9 +113,10 @@ public:
const word& baseName,
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField
const realx3Field_D& initialValField,
bool keepHistory
),
(baseName, pStruct, method, initialValField)
(baseName, pStruct, method, initialValField, keepHistory)
);
@ -131,6 +143,13 @@ public:
return owner_;
}
bool keepHistory()const
{
return keepHistory_;
}
virtual
void updateBoundariesSlaveToMasterIfRequested() = 0;
/// return integration method
virtual
word method()const = 0 ;
@ -144,21 +163,10 @@ public:
/// Correction/main integration step
virtual
bool correct(real dt, realx3PointField_D& y, realx3PointField_D& dy) = 0;
bool correct(real dt, realx3PointField_D& y, realx3PointField_D& dy, real damping = 1.0) = 0;
virtual
bool correct(real dt, realx3Field_D& y, realx3PointField_D& dy) = 0;
/// Set the initial values for new indices
virtual
bool setInitialVals(
const int32IndexContainer& newIndices,
const realx3Vector& y) = 0;
/// Check if the method requires any set initial vals
virtual
bool needSetInitialVals()const = 0;
bool correctPStruct(real dt, pointStructure& pStruct, realx3PointField_D& vel) = 0;
/// Create the polymorphic object based on inputs
static
@ -166,7 +174,8 @@ public:
const word& baseName,
pointStructure& pStruct,
const word& method,
const realx3Field_D& initialValField);
const realx3Field_D& initialValField,
bool keepHistory);
}; // integration